Natural and engineered nicking endonucleases - from cleavage mechanism to engineering of strand-specificity. - Siu-Hong Chan; Barry L. Stoddard; Shuang-yong Xu (Nucleic Acids Res., 2011)

LAHEDES: the LAGLIDADG homing endonuclease database and engineering server. - Gregory K. Taylor; Lucas H. Petrucci; Abigail R. Lambert; Sarah K. Baxter; Jordan Jarjour; Barry L. Stoddard (Nucleic Acids Res., 2012)

Computational design of ligand-binding proteins with high affinity and selectivity. - Christine E. Tinberg; Sagar D. Khare; Jiayi Dou; Lindsey Doyle; Jorgen W. Nelson; Alberto Schena; Wojciech Jankowski; Charalampos G. Kalodimos; Kai Johnsson; Barry L. Stoddard; David Baker 001 (Nat., 2013)

Rational design of α-helical tandem repeat proteins with closed architectures. - Lindsey Doyle; Jazmine Hallinan; Jill Bolduc; Fabio Parmeggiani; David Baker 001; Barry L. Stoddard; Philip Bradley (Nat., 2015)

Biocontainment of genetically modified organisms by synthetic protein design. - Daniel J. Mandell; Marc J. Lajoie; Michael T. Mee; Ryo Takeuchi; Gleb Kuznetsov; Julie E. Norville; Christopher J. Gregg; Barry L. Stoddard; George M. Church (Nat., 2015)

Corrigendum: Biocontainment of genetically modified organisms by synthetic protein design. - Daniel J. Mandell; Marc J. Lajoie; Michael T. Mee; Ryo Takeuchi; Gleb Kuznetsov; Julie E. Norville; Christopher J. Gregg; Barry L. Stoddard; George M. Church (Nat., 2015)

De novo design of a fluorescence-activating β-barrel. - Jiayi Dou; Anastassia A. Vorobieva; William Sheffler; Lindsey Doyle; Hahnbeom Park; Matthew J. Bick; Binchen Mao; Glenna W. Foight; Min-Yen Lee; Lauren A. Gagnon; Lauren P. Carter; Banumathi Sankaran; et al. (Nat., 2018)