High-Order and Efficient Methods for the Vorticity Formulation of the Euler Equations. - John S. Lowengrub; Michael J. Shelley; Barry Merriman (SIAM J. Sci. Comput., 1993)

Implicit and Nonparametric Shape Reconstruction from Unorganized Data Using a Variational Level Set Method. - Hong-Kai Zhao; Stanley J. Osher; Barry Merriman; Myungjoo Kang (Comput. Vis. Image Underst., 2000)

Convolution-Generated Motion and Generalized Huygens' Principles for Interface Motion. - Barry Merriman; Steven J. Ruuth (SIAM J. Appl. Math., 2000)

Diffusion-Generated Motion by Mean Curvature for Filaments. - Steven J. Ruuth; Barry Merriman; Jack Xin; Stanley J. Osher (J. Nonlinear Sci., 2001)

Understanding the Shu-Osher Conservative Finite Difference Form. - Barry Merriman (J. Sci. Comput., 2003)

Diffusion generated motion of curves on surfaces. - Barry Merriman; Steven J. Ruuth (J. Comput. Phys., 2007)

Symmetry reduction for molecular dynamics simulation of an imploding gas bubble. - Alexander Bass; Seth Putterman; Barry Merriman; Steven J. Ruuth (J. Comput. Phys., 2008)

A simple embedding method for solving partial differential equations on surfaces. - Steven J. Ruuth; Barry Merriman (J. Comput. Phys., 2008)

Local alignment of two-base encoded DNA sequence. - Nils Homer; Barry Merriman; Stanley F. Nelson (BMC Bioinform., 2009)

Local alignment of generalized k-base encoded DNA sequence. - Nils Homer; Stanley F. Nelson; Barry Merriman (BMC Bioinform., 2010)

SeqWare Query Engine: storing and searching sequence data in the cloud. - Brian D. O'Connor; Barry Merriman; Stanley F. Nelson (BMC Bioinform., 2010)

A CMOS Molecular Electronics Chip for Single-Molecule Biosensing. - Drew A. Hall; Nagaraj Ananthapad Manabhan; Chulmin Choi; Le Zheng; Paul P. Pan; Carl W. Fuller; Pius P. Padayatti; Calvin Gardner; Daniel Gebhardt; Zsolt Majzik; Prem Sinha; Paul W. Mola; et al. (ISSCC, 2022)

Helix: An Electrochemical CMOS DNA Synthesizer. - Omid Ghadami; Hongyu Lu; Matthew R. Chan; Mila Tan; Saeromi Chung; Sang Heon Lee; Matthew T. Holden; Ryan de Ridder; Barry Merriman; Drew A. Hall (VLSI Technology and Circuits, 2022)

A Scalable CMOS Molecular Electronics Chip for Single-Molecule Biosensing. - Drew A. Hall; Nagaraj Ananthapadmanabhan; Chulmin Choi; Le Zheng; Paul P. Pan; Christoph Von Jutrzenka; Thuan Nguyen; Jose Rizo; Macklan Weinstein; Raymond Lobaton; Prem Sinha; Trevor Sauerbrey; et al. (IEEE Trans. Biomed. Circuits Syst., 2022)