Book reviews. - Robert E. Filman; Donald Nute; Merrie Bergmann; Thomas Tymoczko; Barry Smith 001; Gerard Ellis; Ronald N. Giere (Minds Mach., 1994)

On Drawing Lines on a Map. - Barry Smith 001 (COSIT, 1995)

Formal ontology, common sense and cognitive science. - Barry Smith 001 (Int. J. Hum. Comput. Stud., 1995)

Mereotopology: A Theory of Parts and Boundaries. - Barry Smith 001 (Data Knowl. Eng., 1996)

Fiat and Bona Fide Boundaries: Towards on Ontology of Spatially Extended Objects. - Barry Smith 001; Achille C. Varzi (COSIT, 1997)

The Formal Structure of Ecological Contexts. - Barry Smith 001; Achille C. Varzi (CONTEXT, 1999)

Ontology and Geographic Objects: An Empirical Study of Cognitive Categorization. - David M. Mark; Barry Smith 001; Barbara Tversky (COSIT, 1999)

Agglomerations. - Barry Smith 001 (COSIT, 1999)

A Taxonomy of Granular Partitions. - Thomas Bittner; Barry Smith 001 (COSIT, 2001)

Features, Objects, and Other Things: Ontological Distinctions in the Geographic Domain. - David M. Mark; André Skupin; Barry Smith 001 (COSIT, 2001)

True Grid. - Barry Smith 001 (COSIT, 2001)

Granular partitions and vagueness. - Thomas Bittner; Barry Smith 001 (FOIS, 2001)

GOL: toward an axiomatized upper-level ontology. - Wolfgang Degen; Barbara Heller; Heinrich Herre; Barry Smith 001 (FOIS, 2001)

FOIS introduction: Ontology - towards a new synthesis. - Barry Smith 001; Christopher A. Welty (FOIS, 2001)

Geographical categories: an ontological investigation. - Barry Smith 001; David M. Mark (Int. J. Geogr. Inf. Sci., 2001)

Quantum Mereotopology. - Barry Smith 001; Berit Brogaard (Ann. Math. Artif. Intell., 2002)

Surrounding space the ontology of organism-environment relations. - Barry Smith 001; Achille C. Varzi (Theory Biosci., 2002)

A Theory of Granular Partitions. - Thomas Bittner; Barry Smith 001 (Foundations of Geographic Information Science, 2003)

Ontology for Task-Based Clinical Guidelines and the Theory of Granular Partitions. - Anand Kumar 005; Barry Smith 001 (AIME, 2003)

Bodily Systems and the Modular Structure of the Human Body. - Barry Smith 001; Igor Papakin; Katherine Munn (AIME, 2003)

The Ontology of the Gene Ontology. - Barry Smith 001; Jennifer Williams; Steffen Schulze-Kremer (AMIA, 2003)

Layers: A New Approach to Locating Objects in Space. - Maureen Donnelly; Barry Smith 001 (COSIT, 2003)

The Universal Medical Language System and the Gene Ontology: Some Critical Reflections. - Anand Kumar 005; Barry Smith 001 (KI, 2003)

Using Cross-Lingual Information to Cope with Underspecification in Formal Ontologies. - Werner Ceusters; Ignace Desimpel; Barry Smith 001; Stefan Schulz 001 (MIE, 2003)

Vague Reference and Approximating Judgments. - Thomas Bittner; Barry Smith 001 (Spatial Cogn. Comput., 2003)

Towards a Proteomics Meta-Classification. - Anand Kumar 005; Barry Smith 001 (BIBE, 2004)

Medical WordNet: A New Methodology for the Construction and Validation of Information Resources for Consumer Health. - Barry Smith 001; Christiane Fellbaum (COLING, 2004)

LinkSuite™: Formally Robust Ontology-Based Data and Information Integration. - Werner Ceusters; Barry Smith 001; James Matthew Fielding (DILS, 2004)

On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology. - Barry Smith 001; Jacob Köhler; Anand Kumar 005 (DILS, 2004)

Ontological Theory for Ontological Engineering: Biomedical Systems Information Integration. - James Matthew Fielding; Jonathan Simon; Werner Ceusters; Barry Smith 001 (KR, 2004)

Investigating subsumption in DL-based terminologies: A Case Study in SNOMED CT . - Olivier Bodenreider; Barry Smith 001; Anand Kumar 005; Anita Burgun (KR-MED, 2004)

The Role of Foundational Relations in the Alignment of Biomedical Ontologies. - Barry Smith 001; Cornelius Rosse (MedInfo, 2004)

Ontology-Based Error Detection in SNOMED-CT®. - Werner Ceusters; Barry Smith 001; Anand Kumar 005; Christoffel Dhaen (MedInfo, 2004)

Using Philosophy to Improve the Coherence and Interoperability of Applications Ontologies: A Field Report on the Collaboration of IFOMIS and L&C. - Jonathan Simon; James Matthew Fielding; Barry Smith 001 (WSPI, 2004)

Endurants and perdurants in directly depicting ontologies. - Thomas Bittner; Maureen Donnelly; Barry Smith 001 (AI Commun., 2004)

Ontology-assisted database integration to support natural language processing and biomedical data-mining. - Jean-Luc Verschelde; Mariana Casella dos Santos; Tom Deray; Barry Smith 001; Werner Ceusters (J. Integr. Bioinform., 2004)

SNAP and SPAN: Towards Dynamic Spatial Ontology. - Pierre Grenon; Barry Smith 001 (Spatial Cogn. Comput., 2004)

Oncology Ontology in the NCI Thesaurus. - Anand Kumar 005; Barry Smith 001 (AIME, 2005)

A Strategy for Improving and Integrating Biomedical Ontologies. - Cornelius Rosse; Anand Kumar 005; José L. V. Mejino Jr.; Daniel L. Cook; Landon T. Detwiler; Barry Smith 001 (AMIA, 2005)

How to Distinguish Parthood from Location in Bio-Ontologies. - Stefan Schulz 001; Philipp Daumke; Barry Smith 001; Udo Hahn (AMIA, 2005)

An Ontology-Based Methodology for the Migration of Biomedical Terminologies to Electronic Health Records. - Barry Smith 001; Werner Ceusters (AMIA, 2005)

Anatomical Information Science. - Barry Smith 001; José L. V. Mejino Jr.; Stefan Schulz 001; Anand Kumar 005; Cornelius Rosse (COSIT, 2005)

Wüsteria. - Barry Smith 001; Werner Ceusters; Rita Temmerman (MIE, 2005)

Tracking Referents in Electronic Health Records. - Werner Ceusters; Barry Smith 001 (MIE, 2005)

The Significance of SNODENT. - Louis J. Goldberg; Werner Ceusters; John Eisner; Barry Smith 001 (MIE, 2005)

An Ontology for Carcinoma Classification for Clinical Bioinformatics. - Anand Kumar 005; Yum Lina Yip; Barry Smith 001; Dirk Marwede; Daniel Novotný (MIE, 2005)

A Realism-Based Approach to the Evolution of Biomedical Ontologies. - Werner Ceusters; Barry Smith 001 (AMIA, 2006)

Against Idiosyncrasy in Ontology Development. - Barry Smith 001 (FOIS, 2006)

Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain. - Barry Smith 001; Waclaw Kusnierczyk; Daniel Schober; Werner Ceusters (KR-MED, 2006)

Referent Tracking: The Problem of Negative Findings. - Werner Ceusters; Peter L. Elkin; Barry Smith 001 (MIE, 2006)

HL7 RIM: An Incoherent Standard. - Barry Smith 001; Werner Ceusters (MIE, 2006)

The 2006 Upper Ontology Summit Joint Communiqué. - Leo Obrst; Patrick Cassidy; Steve Ray; Barry Smith 001; Dagobert Soergel; Matthew West 002; Peter Yim (Appl. Ontology, 2006)

Quality control for terms and definitions in ontologies and taxonomies. - Jacob Köhler; Katherine Munn; Alexander Rüegg; Andre Skusa; Barry Smith 001 (BMC Bioinform., 2006)

Bridging the gap between medical and bioinformatics: An ontological case study in colon carcinoma. - Anand Kumar 005; Yum Lina Yip; Barry Smith 001; Pierre Grenon (Comput. Biol. Medicine, 2006)

Formal ontology for natural language processing and the integration of biomedical databases. - Jonathan Simon; Mariana Casella dos Santos; James Matthew Fielding; Barry Smith 001 (Int. J. Medical Informatics, 2006)

Strategies for referent tracking in electronic health records. - Werner Ceusters; Barry Smith 001 (J. Biomed. Informatics, 2006)

Introduction: International Medical Informatics Association Working Group 6 and the 2005 Rome Conference. - James J. Cimino; Barry Smith 001 (J. Biomed. Informatics, 2006)

Towards new information resources for public health - From WordNet to MedicalWordNet. - Christiane Fellbaum; Udo Hahn; Barry Smith 001 (J. Biomed. Informatics, 2006)

From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies. - Barry Smith 001 (J. Biomed. Informatics, 2006)

Referent tracking for treatment optimisation in schizophrenic patients: A case study in applying philosophical ontology to diagnostic algorithms. - Werner Ceusters; Barry Smith 001 (J. Web Semant., 2006)

Would SNOMED CT benefit from Realism-Based Ontology Evolution? - Werner Ceusters; Kent A. Spackman; Barry Smith 001 (AMIA, 2007)

What Particulars are Referred to in Electronic Health Record Data? A Case Study in Integrating Referent Tracking into an EHR Application. - Ron Rudnicki; Werner Ceusters; Shahid Manzoor; Barry Smith 001 (AMIA, 2007)

Information-Theoretic Classification of SNOMED Improves the Organization of Context-Sensitive Excerpts from Cochrane Reviews. - Lee T. Sam; Tara Borlawsky; Ying Tao; Jianrong Li; Carol Friedman; Barry Smith 001; Yves A. Lussier (AMIA, 2007)

07132 Report - Towards Interoperability of Biomedical Ontologies. - Mark A. Musen; Michael Schroeder 001; Barry Smith 001 (Towards Interoperability of Biomedical Ontologies, 2007)

Referent Tracking and its Applications. - Werner Ceusters; Barry Smith 001 (I3, 2007)

A Multi-INT Semantic Reasoning Framework for Intelligence Analysis Support. - Terry L. Janssen; Herbert Basik; Mike Dean; Barry Smith 001 (OIC, 2007)

Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. - Olivier Bodenreider; Barry Smith 001; Anand Kumar 005; Anita Burgun (Artif. Intell. Medicine, 2007)

Framework for a Protein Ontology. - Darren A. Natale; Cecilia N. Arighi; Winona C. Barker; Judith A. Blake; Ti-Cheng Chang; Zhang-Zhi Hu; Hongfang Liu; Barry Smith 001; Cathy H. Wu (BMC Bioinform., 2007)

Negative findings in electronic health records and biomedical ontologies: A realist approach. - Werner Ceusters; Peter L. Elkin; Barry Smith 001 (Int. J. Medical Informatics, 2007)

Referent tracking for Digital Rights Management. - Werner Ceusters; Barry Smith 001 (Int. J. Metadata Semant. Ontologies, 2007)

Ontology (Science). - Barry Smith 001 (FOIS, 2008)

Applications of the ACGT Master Ontology on Cancer. - Mathias Brochhausen; Gabriele Weiler; Luis Martín; Cristian Cocos; Holger Stenzhorn; Norbert M. Graf; Martin Doerr; Manolis Tsiknakis; Barry Smith 001 (OTM Workshops, 2008)

Gene Ontology annotations: what they mean and where they come from. - David P. Hill; Barry Smith 001; Monica S. McAndrews-Hill; Judith A. Blake (BMC Bioinform., 2008)

Adapting Clinical Ontologies in Real-World Environments. - Holger Stenzhorn; Stefan Schulz 001; Martin Boeker; Barry Smith 001 (J. Univers. Comput. Sci., 2008)

CARO - The Common Anatomy Reference Ontology. - Melissa A. Haendel; Fabian Neuhaus; David Osumi-Sutherland; Paula M. Mabee; José L. V. Mejino Jr.; Chris Mungall; Barry Smith 001 (Anatomy Ontologies for Bioinformatics, 2008)

Modelling Principles and Methodologies - Relations in Anatomical Ontologies. - Fabian Neuhaus; Barry Smith 001 (Anatomy Ontologies for Bioinformatics, 2008)

The Role of Ontologies for Sustainable, Semantically Interoperable and Trustworthy EHR Solutions. - Bernd Blobel; Dipak Kalra; Marc Koehn; Ken Lunn; Peter Pharow; Pekka Ruotsalainen; Stefan Schulz 001; Barry Smith 001 (MIE, 2009)

An Evolutionary Approach to the Representation of Adverse Events. - Werner Ceusters; Maria Capolupo; Barry Smith 001; Georges De Moor (MIE, 2009)

TGF-beta signaling proteins and the Protein Ontology. - Cecilia N. Arighi; Hongfang Liu; Darren A. Natale; Winona C. Barker; Harold J. Drabkin; Judith A. Blake; Barry Smith 001; Cathy H. Wu (BMC Bioinform., 2009)

An improved ontological representation of dendritic cells as a paradigm for all cell types. - Anna Maria Masci; Cecilia N. Arighi; Alexander D. Diehl; Anne E. Lieberman; Chris Mungall; Richard H. Scheuermann; Barry Smith 001; Lindsay G. Cowell (BMC Bioinform., 2009)

Survey-based naming conventions for use in OBO Foundry ontology development. - Daniel Schober; Barry Smith 001; Suzanna E. Lewis; Waclaw Kusnierczyk; Jane Lomax; Chris Mungall; Chris F. Taylor; Philippe Rocca-Serra; Susanna-Assunta Sansone (BMC Bioinform., 2009)

A spatio-temporal ontology for geographic information integration. - Thomas Bittner; Maureen Donnelly; Barry Smith 001 (Int. J. Geogr. Inf. Sci., 2009)

Dispositions and the Infectious Disease Ontology. - Albert Goldfain; Barry Smith 001; Lindsay G. Cowell (FOIS, 2010)

A Unified Framework for Biomedical Terminologies and Ontologies. - Werner Ceusters; Barry Smith 001 (MedInfo, 2010)

Ontological realism: A methodology for coordinated evolution of scientific ontologies. - Barry Smith 001; Werner Ceusters (Appl. Ontology, 2010)

Foundations for a realist ontology of mental disease. - Werner Ceusters; Barry Smith 001 (J. Biomed. Semant., 2010)

Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base. - Jiye Ai; Barry Smith 001; Wong T. David (BMC Bioinform., 2010)

Concept Systems and Ontologies: Recommendations for Basic Terminology. - Gunnar O. Klein; Barry Smith 001 (Inf. Media Technol., 2010)

The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences. - Janna Hastings; Werner Ceusters; Barry Smith 001; Kevin Mulligan (CONTEXT, 2011)

Towards a Body Fluids Ontology: A Unified Application Ontology for Basic and Translational Science. - Jiye Ai; Mauricio Barcellos Almeida; André Queiroz de Andrade; Alan Ruttenberg; David Tai Wai Wong; Barry Smith 001 (ICBO, 2011)

The Blood Ontology: An Ontology in the Domain of Hematology. - Mauricio Barcellos Almeida; Anna Barbara de Freitas Carneiro Proietti; Jiye Ai; Barry Smith 001 (ICBO, 2011)

Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools. - Cecilia N. Arighi; Darren A. Natale; Judith A. Blake; Carol J. Bult; Michael Caudy; Alexander D. Diehl; Harold J. Drabkin; Peter D'Eustachio; Alexei V. Evsikov; Hongzhan Huang; Natalia V. Roberts; Alan Ruttenberg; et al. (ICBO, 2011)

Dispositions and Processes in the Emotion Ontology. - Janna Hastings; Werner Ceusters; Barry Smith 001; Kevin Mulligan (ICBO, 2011)

The HL7 Approach to Semantic Interoperability. - Jobst Landgrebe; Barry Smith 001 (ICBO, 2011)

Bioportal: Ontologies and Integrated Data Resources at the Click of a Mouse. - Patricia L. Whetzel; Natasha F. Noy; Nigam Shah; Paul R. Alexander; Michael Dorf; Ray W. Fergerson; Margaret-Anne D. Storey; Barry Smith 001; Christopher G. Chute; Mark A. Musen (ICBO, 2011)

Integration of Intelligence Data through Semantic Enhancement. - David Salmen; Tatiana Malyuta; Alan Hansen; Shaun Cronen; Barry Smith 001 (STIDS, 2011)

On the ontology of functions. - Stefano Borgo; Riichiro Mizoguchi; Barry Smith 001 (Appl. Ontology, 2011)

Creating the ontologists of the future. - Fabian Neuhaus; Elizabeth Florescu; Antony Galton; Michael Grüninger; Nicola Guarino; Leo Obrst; Arturo Sanchez; Amanda Vizedom; Peter Yim; Barry Smith 001 (Appl. Ontology, 2011)

The Representation of Protein Complexes in the Protein Ontology (PRO). - Carol J. Bult; Harold J. Drabkin; Alexei V. Evsikov; Darren A. Natale; Cecilia N. Arighi; Natalia V. Roberts; Alan Ruttenberg; Peter D'Eustachio; Barry Smith 001; Judith A. Blake; Cathy H. Wu (BMC Bioinform., 2011)

Towards an ontological representation of resistance: The case of MRSA. - Albert Goldfain; Barry Smith 001; Lindsay G. Cowell (J. Biomed. Informatics, 2011)

Ontologies for clinical and translational research: Introduction. - Barry Smith 001; Richard H. Scheuermann (J. Biomed. Informatics, 2011)

The Protein Ontology: a structured representation of protein forms and complexes. - Darren A. Natale; Cecilia N. Arighi; Winona C. Barker; Judith A. Blake; Carol J. Bult; Michael Caudy; Harold J. Drabkin; Peter D'Eustachio; Alexei V. Evsikov; Hongzhan Huang; Jules Nchoutmboube; Natalia V. Roberts; et al. (Nucleic Acids Res., 2011)

Foundations of an ontology of philosophy. - Pierre Grenon; Barry Smith 001 (Synth., 2011)

Constructing a Lattice of Infectious Disease Ontologies from a Staphylococcus aureus Isolate Repository. - Albert Goldfain; Lindsay G. Cowell; Barry Smith 001 (ICBO, 2012)

Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies. - Janna Hastings; Nicolas Le Novère; Werner Ceusters; Kevin Mulligan; Barry Smith 001 (ICBO, 2012)

A plant disease extension of the Infectious Disease Ontology. - Ramona L. Walls; Barry Smith 001; Justin Elser; Albert Goldfain; Dennis W. Stevenson; Pankaj Jaiswal (ICBO, 2012)

Horizontal Integration of Warfighter Intelligence Data: A Shared Semantic Resource for the Intelligence Community. - Barry Smith 001; Tatiana Malyuta; William Mandrick; Chia Fu; Kesny Parent; Milan Patel (STIDS, 2012)

The National Center for Biomedical Ontology. - Mark A. Musen; Natalya Fridman Noy; Nigam H. Shah; Patricia L. Whetzel; Christopher G. Chute; Margaret-Anne D. Storey; Barry Smith 001 (J. Am. Medical Informatics Assoc., 2012)

Ontology Based Annotation of Contextualized Vital Signs. - Albert Goldfain; Min Xu; Jonathan P. Bona; Barry Smith 001 (ICBO, 2013)

Representing Disease Courses: An Application of the Neurological Disease Ontology to Multiple Sclerosis Typology. - Mark Jensen; Alexander P. Cox; Barry Smith 001; Alexander D. Diehl (ICBO, 2013)

Introduction to the Logic of Definitions. - Barry Smith 001 (VDOS+DO@ICBO, 2013)

IAO-Intel: An Ontology of Information Artifacts in the Intelligence Domain. - Barry Smith 001; Tatiana Malyuta; Ron Rudnicki; William Mandrick; David Salmen; Peter Morosoff; Danielle K. Duff; James Schoening; Kesny Parent (STIDS, 2013)

The environment ontology: contextualising biological and biomedical entities. - Pier Luigi Buttigieg; Norman Morrison; Barry Smith 001; Christopher J. Mungall; Suzanna E. Lewis (J. Biomed. Semant., 2013)

The neurological disease ontology. - Mark Jensen; Alexander P. Cox; Naveed Chaudhry; Marcus Ng; Donat Sule; William D. Duncan; Patrick Ray; Bianca Weinstock-Guttman; Barry Smith 001; Alan Ruttenberg; Kinga Szigeti; Alexander D. Diehl (J. Biomed. Semant., 2013)

Applying the Realism-Based Ontology-Versioning Method for Tracking Changes in the Basic Formal Ontology. - Selja Seppälä; Barry Smith 001; Werner Ceusters (FOIS, 2014)

Clinical Data Wrangling using Ontological Realism and Referent Tracking. - Werner Ceusters; Chiun Yu Hsu; Barry Smith 001 (ICBO, 2014)

Ontological Representation of CDC Active Bacterial Core Surveillance Case Reports. - Albert Goldfain; Barry Smith 001; Lindsay G. Cowell (ICBO, 2014)

OBCS: The Ontology of Biological and Clinical Statistics. - Jie Zheng 001; Marcelline R. Harris; Anna Maria Masci; Yu Lin; Alfred O. Hero III; Barry Smith 001; Yongqun He (ICBO, 2014)

An Ontological Approach to Territorial Disputes. - Brian Donohue; J. Neil Otte; Barry Smith 001 (STIDS, 2014)

Ontological Support for Living Plan Specification, Execution and Evaluation. - Erik Thomsen; Frederick Reed; William D. Duncan; Tatanya Malyuta; Barry Smith 001 (STIDS, 2014)

OAE: The Ontology of Adverse Events. - Yongqun He; Sirarat Sarntivijai; Yu Lin; Zuoshuang Xiang; Abra Guo; Shelley Zhang 002; Desikan Jagannathan; Luca Toldo; Cui Tao; Barry Smith 001 (J. Biomed. Semant., 2014)

Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. - Janna Hastings; Gwen A. Frishkoff; Barry Smith 001; Mark Jensen; Russell A. Poldrack; Jane Lomax; Anita E. Bandrowski; Fahim T. Imam; Jessica A. Turner; Maryann E. Martone (Frontiers Neuroinformatics, 2014)

Protein Ontology: a controlled structured network of protein entities. - Darren A. Natale; Cecilia N. Arighi; Judith A. Blake; Carol J. Bult; Karen R. Christie; Julie Cowart; Peter D'Eustachio; Alexander D. Diehl; Harold J. Drabkin; Olivia Helfer; Hongzhan Huang; Anna Maria Masci; et al. (Nucleic Acids Res., 2014)

A domain ontology for the Non-Coding RNA field. - Jingshan Huang; Karen Eilbeck; Judith A. Blake; Dejing Dou; Darren A. Natale; Alan Ruttenberg; Barry Smith 001; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; Bin Wu 008; Yongqun He; et al. (BIBM, 2015)

A semantic approach for knowledge capture of MIcroRNA-Target gene interactions. - Jingshan Huang; Fernando Gutierrez; Dejing Dou; Judith A. Blake; Karen Eilbeck; Darren A. Natale; Barry Smith 001; Yu Lin; Xiaowei Wang; Zixing Liu; Ming Tan; Alan Ruttenberg (BIBM, 2015)

Aboutness: towards foundations for the Information Artifact Ontology. - Barry Smith 001; Werner Ceusters (ICBO, 2015)

Biomarkers in the Ontology for General Medical Science. - Werner Ceusters; Barry Smith 001 (MIE, 2015)

Controlled and Uncontrolled English for Ontology Editing. - Brian Donohue; Douglas Kutach; Amardeep Bhattal; Dave Braines; Geeth de Mel; Robert Ganger; Tien Pham; Ron Rudnicki; Barry Smith 001 (STIDS, 2015)

Joint Doctrine Ontology: A Benchmark for Military Information Systems Interoperability. - Peter Morosoff; Ron Rudnicki; Jason Bryant; Robert Farrell; Barry Smith 001 (STIDS, 2015)

Interoperability Among Prenatal EHRs: A Formal Ontology Approach. - Fernanda Farinelli; Mauricio Barcellos Almeida; Peter L. Elkin; Barry Smith 001 (AMIA, 2016)

Permanent Generic Relatedness and Silent Change. - Niels Grewe; Ludger Jansen; Barry Smith 001 (JOWO@FOIS, 2016)

The Functions of Definitions in Ontologies. - Selja Seppälä; Alan Ruttenberg; Barry Smith 001 (FOIS, 2016)

The Space Object Ontology. - Alexander P. Cox; Christopher K. Nebelecky; Ronald Rudnicki; William A. Tagliaferri; John L. Crassidis; Barry Smith 001 (FUSION, 2016)

The Planteome Project. - Laurel Cooper; Austin Meier; Justin Elser; Justin Preece; Xu Xu; Ryan Kitchen; Botong Qu; Eugene Zhang; Sinisa Todorovic; Pankaj Jaiswal; Marie-Angélique Laporte; Elizabeth Arnaud; et al. (ICBO/BioCreative, 2016)

The ImmPort Antibody Ontology. - William D. Duncan; Travis Allen; Jonathan P. Bona; Olivia Helfer; Barry Smith 001; Alan Ruttenberg; Alexander D. Diehl (ICBO/BioCreative, 2016)

Dealing with Social and Legal Entities in the Obstetric and Neonatal Domain. - Fernanda Farinelli; Maurício Barcellos de Almeida; Peter L. Elkin; Barry Smith 001 (ICBO/BioCreative, 2016)

Dealing with Elements of Medical Encounters: an Approach Based on the Ontological Realism. - Fernanda Farinelli; Maurício Barcellos de Almeida; Peter L. Elkin; Barry Smith 001 (ICBO/BioCreative, 2016)

Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion. - Edison Ong; Zuoshuang Xiang; Jie Zheng 001; Barry Smith 001; Yongqun He (ICBO/BioCreative, 2016)

The UNEP Ontologies and the OBO Foundry. - Barry Smith 001; Mark Jensen (ICBO/BioCreative, 2016)

Functions in Basic Formal Ontology. - Andrew D. Spear; Werner Ceusters; Barry Smith 001 (Appl. Ontology, 2016)

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. - Jingshan Huang; Karen Eilbeck; Barry Smith 001; Judith A. Blake; Dejing Dou; Weili Huang; Darren A. Natale; Alan Ruttenberg; Jun Huan; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; et al. (J. Biomed. Semant., 2016)

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. - Jingshan Huang; Fernando Gutierrez; Harrison J. Strachan; Dejing Dou; Weili Huang; Barry Smith 001; Judith A. Blake; Karen Eilbeck; Darren A. Natale; Yu Lin; Bin Wu 008; Nisansa de Silva; et al. (J. Biomed. Semant., 2016)

The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis. - Jie Zheng 001; Marcelline R. Harris; Anna Maria Masci; Yu Lin; Alfred O. Hero III; Barry Smith 001; Yongqun He (J. Biomed. Semant., 2016)

The development of non-coding RNA ontology. - Jingshan Huang; Karen Eilbeck; Barry Smith 001; Judith A. Blake; Dejing Dou; Weili Huang; Darren A. Natale; Alan Ruttenberg; Jun Huan; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; et al. (Int. J. Data Min. Bioinform., 2016)

A Diagrammatic Representation for Entities and Mereotopological Relations in Ontologies. - José Maria Parente de Oliveira; Barry Smith 001 (ONTOBRAS, 2017)

A Visual Representation of Part-Whole Relationships in BFO-Conformant Ontologies. - José M. Parente de Oliveira; Barry Smith 001 (WorldCIST (1), 2017)

Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. - Metin N. Gurcan; John Tomaszewski 001; James A. Overton; Scott Doyle; Alan Ruttenberg; Barry Smith 001 (J. Biomed. Informatics, 2017)

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. - Darren A. Natale; Cecilia N. Arighi; Judith A. Blake; Jonathan P. Bona; Chuming Chen; Sheng-Chih Chen; Karen R. Christie; Julie Cowart; Peter D'Eustachio; Alexander D. Diehl; Harold J. Drabkin; William D. Duncan; et al. (Nucleic Acids Res., 2017)

Standardization of the Histopathology Cancer Report: An Ontological Approach. - Anna Maria Masci; Shannon McCall; Alessandro Racioppi; Helena Judge Ellis; Jihad S. Obeid; Barry Smith 001; Christian J. Stoeckert Jr.; Jie Zheng 001 (ICBO, 2018)

The Industrial Ontologies Foundry Proof-of-Concept Project. - Boonserm (Serm) Kulvatunyou; Evan Wallace; Dimitris Kiritsis; Barry Smith 001; Chris Will (APMS (2), 2018)

On Defining Bruxism. - Werner Ceusters; Barry Smith 001 (MIE, 2018)

Ontology-based fusion of sensor data and natural language. - Erik Thomsen; Barry Smith 001 (Appl. Ontology, 2018)

Biomedical ontology alignment: an approach based on representation learning. - Prodromos Kolyvakis; Alexandros Kalousis; Barry Smith 001; Dimitris Kiritsis (J. Biomed. Semant., 2018)

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. - Laurel Cooper; Austin Meier; Marie-Angélique Laporte; Justin Elser; Chris Mungall; Brandon T. Sinn; Dario Cavaliere; Seth Carbon; Nathan A. Dunn; Barry Smith 001; Botong Qu; Justin Preece; et al. (Nucleic Acids Res., 2018)

Foundation for a Realist Ontology of Cognitive Processes. - David Kasmier; David Limbaugh; Barry Smith 001 (ICBO, 2019)

Warranted Diagnosis. - David Limbaugh; David Kasmier; Werner Ceusters; Barry Smith 001 (ICBO, 2019)

Mental Capabilities. - Eric Merrell; David Limbaugh; Alex Anderson; Barry Smith 001 (ICBO, 2019)

Ontology as Product-Service System: Lessons Learned from GO, BFO and DOLCE. - Barry Smith 001 (ICBO, 2019)

A First-Order Logic Formalization of the Industrial Ontologies Foundry Signature Using Basic Formal Ontology. - Barry Smith 001; Farhad Ameri; Hyunmin Cheong; Dimitris Kiritsis; Dusan Sormaz; Chris Will; J. Neil Otte (JOWO, 2019)

Toward an Ontology of Commercial Exchange. - Jonathan Vajda; Eric Merrell; Barry Smith 001 (JOWO, 2019)

An ontological approach to representing the product life cycle. - J. Neil Otte; Dimitris Kiritsis; Munira Mohd Ali; Ruoyu Yang; Binbin Zhang; Ron Rudnicki; Rahul Rai; Barry Smith 001 (Appl. Ontology, 2019)

OHMI: the ontology of host-microbiome interactions. - Yongqun He; Haihe Wang; Jie Zheng 001; Daniel P. Beiting; Anna Maria Masci; Hong Yu 014; Kaiyong Liu; Jianmin Wu; Jeffrey L. Curtis; Barry Smith 001; Alexander V. Alekseyenko; Jihad S. Obeid (J. Biomed. Semant., 2019)

A product life cycle ontology for additive manufacturing. - Munira Mohd Ali; Rahul Rai; J. Neil Otte; Barry Smith 001 (Comput. Ind., 2019)

Making AI meaningful again. - Jobst Landgrebe; Barry Smith 001 (CoRR, 2019)

There is no general AI: Why Turing machines cannot pass the Turing test. - Jobst Landgrebe; Barry Smith 001 (CoRR, 2019)

Conceptual Space Modeling for Space Event Characterization. - Jeremy R. Chapman; David Kasmier; David Limbaugh; Stephen R. Gagnon; John L. Crassidis; James Llinas; Barry Smith 001; Alexander P. Cox (FUSION, 2020)

CIDO: The Community-Based Coronavirus Infectious Disease Ontology. - Yongqun He; Hong Yu 014; Edison Ong; Yang Wang; Yingtong Liu; Anthony Huffman; Hsin-Hui Huang; John Beverley; Asiyah Yu Lin; William D. Duncan; Sivaram Arabandi; Jiangan Xie; et al. (ICBO/ODLS, 2020)

CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView. - Asiyah Yu Lin; Stephan Gebel; Qingliang Leon Li; Sumit Madan; Johannes Darms; Evan Bolton; Barry Smith 001; Martin Hofmann-Apitius; Yongqun Oliver He; Alpha Tom Kodamullil (ICBO/ODLS, 2020)

The Industrial Ontologies Foundry (IOF) Perspectives. - Mohamed-Hedi Karray; J. Neil Otte; Dimitris Kiritsis; Farhad Ameri; Boonserm Kulvatunyou; Chris Will; Rebeca Arista; Rahul Rai; Barry Smith 001 (I-ESA Workshops, 2020)

Ontology and Cognitive Outcomes. - David Limbaugh; David Kasmier; Ronald Rudnicki; James Llinas; Barry Smith 001 (CoRR, 2020)

Benefits of Realist Ontologies to Systems Engineering. - Eric C. Merrell; Robert M. Kelly; David Kasmier; Barry Smith 001; Marc Brittain; Ronald Ankner; Evan Maki; Curtis W. Heisey; Kevin Bush (JOWO, 2021)

Common Core Conformant Definitions for an Ontology of Commercial Exchange. - Eric C. Merrell; Olivier Massin; Barry Smith 001 (JOWO, 2021)

Ontology of Plays for Autonomous Teaming and Collaboration. - David Kasmier; Eric Merrell; Robert M. Kelly; Barry Smith 001; Curtis W. Heisey; Donald Evan Maki; Marc Brittain; Ronald Ankner; Kevin Bush (ONTOBRAS, 2021)

BFO-based ontology enhancement to promote interoperability in BIM. - Justine Flore Tchouanguem Djuedja; Mohamed-Hedi Karray; Bernard Kamsu-Foguem; Camille Magniont; F. Henry Abanda; Barry Smith 001 (Appl. Ontology, 2021)

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. - Rebecca C. Jackson; Nicolas Matentzoglu; James A. Overton; Randi Vita; James P. Balhoff; Pier Luigi Buttigieg; Seth Carbon; Mélanie Courtot; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Nomi L. Harris; et al. (Database J. Biol. Databases Curation, 2021)

The Infectious Disease Ontology in the age of COVID-19. - Shane Babcock; John Beverley; Lindsay G. Cowell; Barry Smith 001 (J. Biomed. Semant., 2021)

An argument for the impossibility of machine intelligence. - Jobst Landgrebe; Barry Smith 001 (CoRR, 2021)

Enriching the functionally graded materials (FGM) ontology for digital manufacturing. - Munira Mohd Ali; Ruoyu Yang; Binbin Zhang; Francesco Furini; Rahul Rai; J. Neil Otte; Barry Smith 001 (Int. J. Prod. Res., 2021)

An Ontological Approach to Enhancing Information Sharing in Disaster Response. - Linda Elmhadhbi; Mohamed-Hedi Karray; Bernard Archimède; J. Neil Otte; Barry Smith 001 (Inf., 2021)

The Industrial Ontologies Foundry (IOF) Core Ontology. - Milos Drobnjakovic; Boonserm (Serm) Kulvatunyou; Farhad Ameri; Chris Will; Barry Smith 001; Albert T. Jones (FOMI, 2022)

AlphaFold, AI and Ontologies. - Barry Smith 001 (ICBO, 2022)

Coordinating Coronavirus Research: The Virus Infectious Disease Ontology. - John Beverley; Yongqun He; Barry Smith 001; Shane Babcock; Eric Merrell; Lindsay G. Cowell; Regina Hurley; Sebastian Deusing (ICBO, 2022)

What is a Service? (abstract). - Barry Smith 001; Peter Koch 008 (JOWO, 2022)

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. - Yongqun He; Hong Yu 014; Anthony Huffman; Asiyah Yu Lin; Darren A. Natale; John Beverley; Ling Zheng; Yehoshua Perl; Zhigang Wang; Yingtong Liu; Edison Ong; Yang Wang; et al. (J. Biomed. Semant., 2022)

Ontology-Driven Multicriteria Decision Support for Victim Evacuation. - Linda Elmhadhbi; Mohamed-Hedi Karray; Bernard Archimède; J. Neil Otte; Barry Smith 001 (Int. J. Inf. Technol. Decis. Mak., 2022)

A Semantics-Based Common Operational Command System for Multiagency Disaster Response. - Linda Elmhadhbi; Mohamed-Hedi Karray; Bernard Archimède; J. Neil Otte; Barry Smith 001 (IEEE Trans. Engineering Management, 2022)

Beyond the Goods-Service Continuum. - Peter Koch 008; Barry Smith 001 (ICBO, 2023)

Ontology of language, with applications to demographic data. - S. Clint Dowland; Barry Smith 001; Matthew Diller; Jobst Landgrebe; William R. Hogan (Appl. Ontology, 2023)

Why machines do not understand: A response to Søgaard. - Jobst Landgrebe; Barry Smith 001 (CoRR, 2023)

Middle architecture criteria. - John Beverley; Giacomo De Colle; Mark Jensen; Carter-Beau Benson; Barry Smith 001 (JOWO, 2024)

Ontologies, arguments, and large-language models (short paper). - John Beverley; Francesco Franda; Mohammed Hedi Karray; Dan Maxwell; Carter-Beau Benson; Barry Smith 001 (JOWO, 2024)

Capabilities: An ontology. - John Beverley; David Limbaugh; Eric Merrell; Peter Koch 008; Barry Smith 001 (JOWO, 2024)

Capabilities. - John Beverley; Peter Koch 008; David Limbaugh; Barry Smith 001 (CoRR, 2024)

Unreal Patterns. - John Beverley; Jim Logan; Barry Smith 001 (CoRR, 2025)