Theoretical relationships of receptor and delivery sensitivities and measurable parameters in in vivo neuroreceptor-radioligand interactions. - Barry Zeeberg (IEEE Trans. Medical Imaging, 1995)

Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage. - Lawrence Hunter; Barry Zeeberg (ISMB, 1997)

Metabolic Pathway Interface to Molecular Biology Databases. - Barry Zeeberg; Kevin Watanabe; Susumu Goto; Ross A. Overbeek; Larry Kerschberg; George Michaels (SSDBM, 1998)

Development of Gene Ontology Tool for Biological Interpretation of Genomic and Proteomic Data. - Weimin Feng; Geoffrey Wang; Barry Zeeberg; Kejiao Guo; Anthony T. Fojo; David W. Kane; William C. Reinhold; Samir Lababidi; John N. Weinstein; May D. Wang (AMIA, 2003)

Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics. - Barry Zeeberg; Joseph Riss; David W. Kane; Kimberly J. Bussey; Edward Uchio; W. Marston Linehan; J. Carl Barrett; John N. Weinstein (BMC Bioinform., 2004)

High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID). - Barry Zeeberg; Haiying Qin; Sudarshan Narasimhan; Margot Sunshine; Hong Cao; David W. Kane; Mark Reimers; Robert M. Stephens; David Bryant; Stanley K. Burt; Eldad Elnekave; Danielle M. Hari; et al. (BMC Bioinform., 2005)

AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets. - Hongfang Liu; Barry Zeeberg; Gang Qu 001; Akif Günes Koru; Alessandro Ferrucci; Ari B. Kahn; Michael C. Ryan; Antej Nuhanovic; Peter J. Munson; William C. Reinhold; David W. Kane; John N. Weinstein (Bioinform., 2007)

SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis. - Ari B. Kahn; Michael C. Ryan; Hongfang Liu; Barry Zeeberg; D. Curtis Jamison; John N. Weinstein (BMC Bioinform., 2007)

VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays. - Hans A. Kestler; André Müller; Johann M. Kraus; Malte Buchholz; Thomas M. Gress; Hongfang Liu; David W. Kane; Barry Zeeberg; John N. Weinstein (BMC Bioinform., 2008)

SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies. - Michael C. Ryan; Barry Zeeberg; Natasha J. Caplen; James A. Cleland; Ari B. Kahn; Hongfang Liu; John N. Weinstein (BMC Bioinform., 2008)

Analysis of Temporal-spatial Co-variation within Gene Expression Microarray Data in an Organogenesis Model. - Martin Ehler; Vinodh N. Rajapakse; Barry Zeeberg; Brian P. Brooks; Jacob D. Brown; Wojciech Czaja; Robert F. Bonner (ISBRA, 2010)

Ontogenomic study of the relationship between number of gene splice variants and GO categorization. - Ari B. Kahn; Barry Zeeberg; Michael C. Ryan; D. Curtis Jamison; David M. Rockoff; Yves Pommier; John N. Weinstein (Bioinform., 2010)

RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis. - Barry Zeeberg; Hongfang Liu; Ari B. Kahn; Martin Ehler; Vinodh N. Rajapakse; Robert F. Bonner; Jacob D. Brown; Brian P. Brooks; Vladimir L. Larionov; William C. Reinhold; John N. Weinstein; Yves Pommier (BMC Bioinform., 2011)