WebPrInSeS: automated full-length clone sequence identification and verification using high-throughput sequencing data. - Andreas Massouras; Frederik Decouttere; Korneel Hens; Bart Deplancke (Nucleic Acids Res., 2010)

GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR. - Carine Gubelmann; Alexandre Gattiker; Andreas Massouras; Korneel Hens; Fabrice P. A. David; Frederik Decouttere; Jacques Rougemont; Bart Deplancke (Database J. Biol. Databases Curation, 2011)

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data. - Sebastian M. Waszak; Helena Kilpinen; Andreas R. Gschwind; Andrea Orioli; Sunil K. Raghav; Robert M. Witwicki; Eugenia Migliavacca; Alisa Yurovsky; Tuuli Lappalainen; Nouria Hernandez; Alexandre Reymond; Emmanouil T. Dermitzakis; et al. (Bioinform., 2014)

ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data. - Vincent Gardeux; Fabrice P. A. David; Adrian Shajkofci; Petra C. Schwalie; Bart Deplancke (Bioinform., 2017)

GETPrime 2.0: gene- and transcript-specific qPCR primers for 13 species including polymorphisms. - Fabrice P. A. David; Jacques Rougemont; Bart Deplancke (Nucleic Acids Res., 2017)

ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses. - Fabrice P. A. David; Maria Litovchenko; Bart Deplancke; Vincent Gardeux (Nucleic Acids Res., 2020)