FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets. - Cuong Cao Dang; Le Sy Vinh; Olivier Gascuel; Bart Hazes; Si Quang Le (BMC Bioinform., 2014)

CDSbank: taxonomy-aware extraction, selection, renaming and formatting of protein-coding DNA or amino acid sequences. - Bart Hazes (BMC Bioinform., 2014)