CHARMM-GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides. - Pin-Chia Hsu; Bart M. H. Bruininks; Damien Jefferies; Paulo C. T. Souza; Jumin Lee; Dhilon S. Patel; Siewert J. Marrink; Yifei Qi; Syma Khalid; Wonpil Im (J. Comput. Chem., 2017)

Unbreaking Assemblies in Molecular Simulations with Periodic Boundaries. - Bart M. H. Bruininks; Tsjerk A. Wassenaar; Ilpo Vattulainen (J. Chem. Inf. Model., 2023)