Unipept web services for metaproteomics analysis. - Bart Mesuere; Toon Willems; Felix Van der Jeugt; Bart Devreese; Peter Vandamme; Peter Dawyndt (Bioinform., 2016)

Unipept CLI 2.0: adding support for visualizations and functional annotations. - Pieter Verschaffelt; Philippe Van Thienen; Tim Van Den Bossche; Felix Van der Jeugt; Caroline De Tender; Lennart Martens; Peter Dawyndt; Bart Mesuere (Bioinform., 2020)

Unipept Visualizations: an interactive visualization library for biological data. - Pieter Verschaffelt; James H. Collier; Alexander Botzki; Lennart Martens; Peter Dawyndt; Bart Mesuere (Bioinform., 2022)

FragGeneScanRs: faster gene prediction for short reads. - Felix Van der Jeugt; Peter Dawyndt; Bart Mesuere (BMC Bioinform., 2022)

Dolos: Language-agnostic plagiarism detection in source code. - Rien Maertens; Charlotte Van Petegem; Niko Strijbol; Toon Baeyens; Arne Carla Jacobs; Peter Dawyndt; Bart Mesuere (J. Comput. Assist. Learn., 2022)

Dolos 2.0: Towards Seamless Source Code Plagiarism Detection in Online Learning Environments. - Rien Maertens; Peter Dawyndt; Bart Mesuere (ITiCSE (2), 2023)

Dodona: Learn to Code with a Virtual Co-teacher that Supports Active Learning. - Charlotte Van Petegem; Peter Dawyndt; Bart Mesuere (ITiCSE (2), 2023)

TESTed - An educational testing framework with language-agnostic test suites for programming exercises. - Niko Strijbol; Charlotte Van Petegem; Rien Maertens; Boris Sels; Christophe Scholliers; Peter Dawyndt; Bart Mesuere (SoftwareX, 2023)

Dodona: Learn to code with a virtual co-teacher that supports active learning. - Charlotte Van Petegem; Rien Maertens; Niko Strijbol; Jorg Van Renterghem; Felix Van der Jeugt; Bram de Wever; Peter Dawyndt; Bart Mesuere (SoftwareX, 2023)

Mining patterns in syntax trees to automate code reviews of student solutions for programming exercises. - Charlotte Van Petegem; Kasper Demeyere; Rien Maertens; Niko Strijbol; Bram de Wever; Bart Mesuere; Peter Dawyndt (CoRR, 2024)

Discovering and exploring cases of educational source code plagiarism with Dolos. - Rien Maertens; Maarten Van Neyghem; Maxiem Geldhof; Charlotte Van Petegem; Niko Strijbol; Peter Dawyndt; Bart Mesuere (SoftwareX, 2024)

Reproducing Predictive Learning Analytics in CS1: Toward Generalizable and Explainable Models for Enhancing Student Retention. - Denis Zhidkikh; Ville Heilala; Charlotte Van Petegem; Peter Dawyndt; Miitta Järvinen; Sami Viitanen; Bram de Wever; Bart Mesuere; Vesa Lappalainen; Lauri Kettunen; Raija Hämäläinen (J. Learn. Anal., 2024)

Blink: An educational software debugger for Scratch. - Niko Strijbol; Robbe De Proft; Klaas Goethals; Bart Mesuere; Peter Dawyndt; Christophe Scholliers (SoftwareX, 2024)

Source Code Plagiarism Detection as a Service with Dolos. - Rien Maertens; Peter Dawyndt; Bart Mesuere (ITiCSE (2), 2025)

Are LLMs Good at Answering Student Questions in CS1 Courses? - Thomas Van Mullem; Bart Mesuere; Peter Dawyndt (ITiCSE (2), 2025)