Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis. - Erik van den Akker 001; Bas Verbruggen; Bas T. Heijmans; Marian Beekman; Joost N. Kok; Pieternella E. Slagboom; Marcel J. T. Reinders (J. Integr. Bioinform., 2011)

MethylAid: visual and interactive quality control of large Illumina 450k datasets. - Maarten van Iterson; Elmar W. Tobi; Roderick C. Slieker; Wouter den Hollander; René Luijk; P. Eline Slagboom; Bastiaan T. Heijmans (Bioinform., 2014)

An alternative approach to multiple testing for methylation QTL mapping reduces the proportion of falsely identified CpGs. - René Luijk; Jelle J. Goeman; P. Eline Slagboom; Bastiaan T. Heijmans; Erik W. van Zwet (Bioinform., 2015)

omicsPrint: detection of data linkage errors in multiple omics studies. - Maarten van Iterson; Davy Cats; Paul Hop; BIOS Consortium; Bastiaan T. Heijmans (Bioinform., 2018)

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies. - Lucy Sinke; Davy Cats; Bastiaan T. Heijmans (Bioinform., 2021)