The Hidden Microbiome Pipeline: Providing Access to Clinical Microbiome Specimens, Sequences, and Informatics Resources. - Bashir Hamidi; Leslie A. Lenert; Jihad S. Obeid; Alexander V. Alekseyenko (AMIA, 2018)

Simulation Study of Just-in-Time Specimen Recruitment from University-Wide e-Phenotypes of Interest. - Bashir Hamidi; Leslie A. Lenert; Alexander V. Alekseyenko (AMIA, 2019)

Colonizing Microbiome as a Determinant of COVID-19 Outcome: A Pilot Study. - Alexander V. Alekseyenko; Bashir Hamidi; Stéphane M. Meystre (AMIA, 2021)

Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank. - Alexander V. Alekseyenko; Bashir Hamidi; Trevor D. Faith; Keith A. Crandall; Jennifer G. Powers; Christopher Metts; James E. Madory; Steven L. Carroll; Jihad S. Obeid; Leslie A. Lenert (J. Am. Medical Informatics Assoc., 2021)

Not all phenotypes are created equal: covariates of success in e-phenotype specification. - Bashir Hamidi; Patrick A. Flume; Kit N. Simpson; Alexander V. Alekseyenko (J. Am. Medical Informatics Assoc., 2023)