D-leaping: Accelerating stochastic simulation algorithms for reactions with delays. - Basil Bayati; Philippe Chatelain; Petros Koumoutsakos (J. Comput. Phys., 2009)

A Stochastic Model for Microtubule Motors Describes the In Vivo Cytoplasmic Transport of Human Adenovirus. - Mattia Gazzola; Christoph J. Burckhardt; Basil Bayati; Martin Engelke; Urs F. Greber; Petros Koumoutsakos (PLoS Comput. Biol., 2009)

Adaptive mesh refinement for stochastic reaction-diffusion processes. - Basil Bayati; Philippe Chatelain; Petros Koumoutsakos (J. Comput. Phys., 2011)