Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Ion I. Mandoiu; Alexander Zelikovsky (BIBM Workshops, 2011)

Poster: ViSpA: Viral spectrum assembling method. - Irina Astrovskaya; Bassam Tork; Serghei Mangul; Kelly Westbrooks; Ion I. Mandoiu; Peter Balfe; Alexander Zelikovsky (ICCABS, 2011)

Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data. - Serghei Mangul; Irina Astrovskaya; Marius Nicolae; Bassam Tork; Ion I. Mandoiu; Alexander Zelikovsky (WABI, 2011)

Inferring viral quasispecies spectra from 454 pyrosequencing reads. - Irina Astrovskaya; Bassam Tork; Serghei Mangul; Kelly Westbrooks; Ion I. Mandoiu; Peter Balfe; Alex Zelikovsky (BMC Bioinform., 2011)

Workshop: A maximum likelihood method for quasispecies spectrum assembly. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Lilia Ganova-Raeva; Ion I. Mandoiu; Alexander Zelikovsky (ICCABS, 2012)

Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data. - Rachel J. O'Neill; Ion I. Mandoiu; Mazhar I. Khan; Craig Obergfell; Hongjun Wang; Andrew Bligh; Bassam Tork; Nicholas Mancuso; Alexander Zelikovsky (ICCABS, 2012)

Reconstructing viral quasispecies from NGS amplicon reads. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Lilia Ganova-Raeva; Ion I. Mandoiu; Alex Zelikovsky (Silico Biol., 2012)

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. - Pavel Skums; Nicholas Mancuso; Alexander Artyomenko; Bassam Tork; Ion I. Mandoiu; Yuri Khudyakov; Alex Zelikovsky (BMC Bioinform., 2013)