Denoising sparse microbial signals from single-cell sequencing of mammalian host tissues. - Bassel Ghaddar; Martin J. Blaser; Subhajyoti De (Nat. Comput. Sci., 2023)

Hierarchical and automated cell-type annotation and inference of cancer cell of origin with Census. - Bassel Ghaddar; Subhajyoti De (Bioinform., 2023)