Extracting Sequential Nuggets of Knowledge. - Christine Froidevaux; Frédérique Lisacek; Bastien Rance (DEXA, 2007)

An Adaptive Combination of Matchers: Application to the Mapping of Biological Ontologies for Genome Annotation. - Bastien Rance; Jean-François Gibrat; Christine Froidevaux (DILS, 2009)

Improving Bio-Ontologies Matching Using Types and Adaptive Weights. - Bastien Rance; Christine Froidevaux (OM, 2009)

Recherche d'associations séquentielles et alignement d'ontologies biologiques. (Search of sequential associations and biological ontologies alignment). - Bastien Rance (2009)

The REUSE project: EHR as single datasource for biomedical research. - Abdennaji El Fadly; Noël Lucas; Bastien Rance; Philippe Verplancke; Pierre-Yves Lastic; Christel Daniel (MedInfo, 2010)

A Knowledge-Based Approach to Medical Records Retrieval. - Dina Demner-Fushman; Swapna Abhyankar; Antonio Jimeno-Yepes; Russell F. Loane; Bastien Rance; François-Michel Lang; Nicholas C. Ide; Emilia Apostolova; Alan R. Aronson (TREC, 2011)

Integrating clinical research with the Healthcare Enterprise: From the RE-USE project to the EHR4CR platform. - Abdennaji El Fadly; Bastien Rance; Noël Lucas; Charles N. Mead; Gilles Chatellier; Pierre-Yves Lastic; Marie-Christine Jaulent; Christel Daniel (J. Biomed. Informatics, 2011)

A mutation-centric approach to identifying pharmacogenomic relations in text. - Bastien Rance; Emily Doughty; Dina Demner-Fushman; Maricel G. Kann; Olivier Bodenreider (J. Biomed. Informatics, 2012)

Network Visualization of UMLS Source Vocabularies using Semantic Groups. - Thai Le; Bastien Rance; Olivier Bodenreider (AMIA, 2013)

A systematic comparison of current sources of disease knowledge. - Aurélie Névéol; Bastien Rance; Zhiyong Lu (AMIA, 2013)

Leveraging Terminological Resources for Mapping between Rare Disease Information Sources. - Bastien Rance; Michelle Snyder; Janine Lewis; Olivier Bodenreider (MedInfo, 2013)

How to de-identify a large clinical corpus in 10 days. - Cyril Grouin; Louise Deléger; Jean-Baptiste Escudié; Gregory Groisy; Anne-Sophie Jannot; Bastien Rance; Xavier Tannier; Aurélie Névéol (AMIA, 2014)

ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data. - Bryan Brancotte; Bastien Rance; Alain Denise; Sarah Cohen Boulakia (DILS, 2014)

Reviewing 741 patients records in two hours with FASTVISU. - Jean-Baptiste Escudié; Anne-Sophie Jannot; Eric Zapletal; Sarah Cohen Boulakia; Georgia Malamut; Anita Burgun; Bastien Rance (AMIA, 2015)

Fingerprinting Biomedical Terminologies - Automatic Classification and Visualization of Biomedical Vocabularies through UMLS Semantic Group Profiles. - Bastien Rance; Thai Le; Olivier Bodenreider (MedInfo, 2015)

Translational research platforms integrating clinical and omics data: a review of publicly available solutions. - Vincent Canuel; Bastien Rance; Paul Avillach; Patrice Degoulet; Anita Burgun (Briefings Bioinform., 2015)

Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure. - Vincent Canuel; Hector Countouris; Pierre Laurent-Puig; Anita Burgun; Bastien Rance (Appl. Clin. Inform., 2016)

Exploring and visualizing multidimensional data in translational research platforms. - William Dunn Jr; Anita Burgun; Marie-Odile Krebs; Bastien Rance (Briefings Bioinform., 2017)

A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease. - Jean-Baptiste Escudié; Bastien Rance; Georgia Malamut; Sherine Khater; Anita Burgun; Christophe Cellier; Anne-Sophie Jannot (BMC Medical Informatics Decis. Mak., 2017)

Designing Scientific SPARQL Queries Using Autocompletion by Snippets. - Karima Rafes; Serge Abiteboul; Sarah Cohen Boulakia; Bastien Rance (eScience, 2018)

The Need of an Open Data Quality Policy: The Case of the "Transparency - Health" Database in the Prevention of Conflict of Interest. - Rodolphe Jantzen; Bastien Rance; Sandrine Katsahian; Anita Burgun; Vincent Looten (MIE, 2018)

A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. - Nicolas Garcelon; Antoine Neuraz; Rémi Salomon; Hassan Faour; Vincent Benoit; Arthur Delapalme; Arnold Munnich; Anita Burgun; Bastien Rance (J. Biomed. Informatics, 2018)

Evaluating the Impact of Text Duplications on a Corpus of More than 600, 000 Clinical Narratives in a French Hospital. - William Digan; Maxime Wack; Vincent Looten; Antoine Neuraz; Anita Burgun; Bastien Rance (MedInfo, 2019)

Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task? - Antoine Neuraz; Vincent Looten; Bastien Rance; Nicolas Daniel; Nicolas Garcelon; Leonardo Campillos-Llanos; Anita Burgun; Sophie Rosset (MedInfo, 2019)

What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse. - Vincent Looten; Liliane Kong Win Chang; Antoine Neuraz; Marie-Anne Landau-Loriot; Benoit Vedie; Jean-Louis Paul; Laëtitia Mauge; Nadia Rivet; Angela Bonifati; Gilles Chatellier; Anita Burgun; Bastien Rance (Comput. Methods Programs Biomed., 2019)

The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding. - Antoine Neuraz; Bastien Rance; Nicolas Garcelon; Leonardo Campillos-Llanos; Anita Burgun; Sophie Rosset (MIE, 2020)

Using an Ontological Representation of Chemotherapy Toxicities for Guiding Information Extraction and Integration from EHRs. - Alice Rogier; Adrien Coulet; Bastien Rance (MedInfo, 2021)

Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. - William Digan; Aurélie Névéol; Antoine Neuraz; Maxime Wack; David Baudoin; Anita Burgun; Bastien Rance (J. Am. Medical Informatics Assoc., 2021)

A framework for validating AI in precision medicine: considerations from the European ITFoC consortium. - Rosy Tsopra; Xosé M. Fernández; Claudio Luchinat; Lilia Alberghina; Hans Lehrach; Marco Vanoni; Felix Dreher 002; Osman Ugur Sezerman; Marc Cuggia; Marie de Tayrac; Edvins Miklasevics; Lucian Mihai Itu; et al. (BMC Medical Informatics Decis. Mak., 2021)

How to improve cancer Patients ENrollment within clinical trials from rEal Life databases using the OMOP oncology Extension: the French PENELOPE initiative. - Emmanuelle Kempf; Morgan Vaterkowski; Nicolas Griffon; Damien Leprovost; Stéphane Bréant; Patricia Serre; Alexandre Mouchet; Rafael Gozlan; Bastien Rance; Gilles Chatellier; Ali Bellamine; Marie Frank; et al. (AMIA, 2022)

Extraction of Tumor Response Criteria in Semi-Structured Imaging Report. - Valentin Pohyer; David Baudoin; Laure Fournier; Bastien Rance (MIE, 2022)

viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome. - Maxime Wack; David Veyer; Camille Peneau; Sonia Lameiras; William Digan; Alain Nicolas; Jessica Zucman-Rossi; Sandrine Imbeaud; Anita Burgun; Hélène Péré; Bastien Rance (MIE, 2022)

Privacy-preserving mimic models for clinical named entity recognition in French. - Nesrine Bannour; Perceval Wajsbürt; Bastien Rance; Xavier Tannier; Aurélie Névéol (J. Biomed. Informatics, 2022)

Event-independent temporal positioning: application to French clinical text. - Nesrine Bannour; Bastien Rance; Xavier Tannier; Aurélie Névéol (BioNLP@ACL, 2023)

Positionnement temporel indépendant des évènements : application à des textes cliniques en français. - Nesrine Bannour; Xavier Tannier; Bastien Rance; Aurélie Névéol (CORIA-TALN (2), 2023)

Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings. - Jong Ho Jhee; Alice Rogier; Dune Giraud; Emma Pinet; Brigitte Sabatier; Bastien Rance; Adrien Coulet (SWAT4HCLS, 2024)

Facilitating phenotyping from clinical texts: the medkit library. - Antoine Neuraz; Ghislain Vaillant; Camila Arias; Olivier Birot; Kim Tâm Huynh; Thibaut Fabacher; Alice Rogier; Nicolas Garcelon; Ivan Lerner; Bastien Rance; Adrien Coulet (CoRR, 2024)

Step-by-Step Guidance to Differential Anemia Diagnosis with Real-World Data and Deep Reinforcement Learning. - Lillian Muyama; Estelle Lu; Geoffrey Cheminet; Jacques Pouchot; Bastien Rance; Anne-Isabelle Tropeano; Antoine Neuraz; Adrien Coulet (CoRR, 2024)

Enhancing clinical data warehousing with provenance data to support longitudinal analyses and large file management: The gitOmmix approach for genomic and image data. - Maxime Wack; Adrien Coulet; Anita Burgun; Bastien Rance (J. Biomed. Informatics, 2025)