T-Cell Epitope Prediction: Rescaling Can Mask Biological Variation between MHC Molecules. - Aidan MacNamara; Ulrich D. Kadolsky; Charles R. M. Bangham; Becca Asquith (PLoS Comput. Biol., 2009)

Quantifying the Impact of Human Immunodeficiency Virus-1 Escape From Cytotoxic T-Lymphocytes. - Ulrich D. Kadolsky; Becca Asquith (PLoS Comput. Biol., 2010)

Why Don't CD8+ T Cells Reduce the Lifespan of SIV-Infected Cells In Vivo? - Marjet Elemans; Nafisa-Katrin Seich al Basatena; Nichole R. Klatt; Christos Gkekas; Guido Silvestri; Becca Asquith (PLoS Comput. Biol., 2011)

Quantification of the Relative Importance of CTL, B Cell, NK Cell, and Target Cell Limitation in the Control of Primary SIV-Infection. - Marjet Elemans; Rodolphe Thiébaut; Amitinder Kaur; Becca Asquith (PLoS Comput. Biol., 2011)

The Efficiency of the Human CD8+ T Cell Response: How Should We Quantify It, What Determines It, and Does It Matter? - Marjet Elemans; Nafisa-Katrin Seich al Basatena; Becca Asquith (PLoS Comput. Biol., 2012)

Rates of CTL Killing in Persistent Viral Infection In Vivo. - Marjet Elemans; Arnaud Florins; Luc Willems; Becca Asquith (PLoS Comput. Biol., 2014)

Quantification of HTLV-1 Clonality and TCR Diversity. - Daniel J. Laydon; Anat Melamed; Aaron Sim; Nicolas A. Gillet; Kathleen Sim; Sam Darko; J. Simon Kroll; Daniel C. Douek; David A. Price; Charles R. M. Bangham; Becca Asquith (PLoS Comput. Biol., 2014)

Reconciling Estimates of Cell Proliferation from Stable Isotope Labeling Experiments. - Raya Ahmed; Liset Westera; Julia Drylewicz; Marjet Elemans; Yan Zhang; Elizabeth Kelly; Rajko Reljic; Kiki Tesselaar; Rob J. De Boer; Derek C. Macallan; José A. M. Borghans; Becca Asquith (PLoS Comput. Biol., 2015)

BIITE: A Tool to Determine HLA Class II Epitopes from T Cell ELISpot Data. - Lies Boelen; Patrick K. O'Neill; Kathryn J. Quigley; Catherine J. Reynolds; Bernard Maillere; John H. Robinson; Ganjana Lertmemongkolchai; Daniel M. Altmann; Rosemary J. Boyton; Becca Asquith (PLoS Comput. Biol., 2016)

The relative contributions of infectious and mitotic spread to HTLV-1 persistence. - Daniel J. Laydon; Vikram Sunkara; Lies Boelen; Charles R. M. Bangham; Becca Asquith (PLoS Comput. Biol., 2020)