Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks. - Farzad Abdolhosseini; Behrooz Azarkhalili; Abbas Maazallahi; Aryan Kamal; Seyed Abolfazl Motahari; Ali Sharifi-Zarchi; Hamidreza Chitsaz (CoRR, 2018)

Inferring Molecular Pathology and micro-RNA Transcriptome from mRNA Profiles of Cancer Biopsies through Deep Multi-Task Learning. - Behrooz Azarkhalili; Ali Saberi; Hamidreza Chitsaz; Ali Sharifi-Zarchi (CoRR, 2018)

Generalized Attention Flow: Feature Attribution for Transformer Models via Maximum Flow. - Behrooz Azarkhalili; Maxwell W. Libbrecht (ACL (1), 2025)