Prediction and Classification for GPCR Sequences Based on Ligand Specific Features. - Bekir Ergüner; Özgün Erdogan; Osman Ugur Sezerman (ISCIS, 2006)

Human Genome in a Smart Card. - Mete Akgün; Bekir Ergüner; Ali Osman Bayrak; Mahmut Samil Sagiroglu (HEALTHINF, 2014)

Improving Genome Assemblies Using Multi-platform Sequence Data. - Pinar Kavak; Bekir Ergüner; Duran Üstek; Bayram Yüksel; Mahmut Samil Sagiroglu; Tunga Güngör; Can Alkan (CIBB, 2015)

Performance comparison of Next Generation sequencing platforms. - Bekir Ergüner; Duran Üstek; Mahmut Samil Sagiroglu (EMBC, 2015)

Identifying disease-causing mutations with privacy protection. - Mete Akgün; Ali Burak Ünal; Bekir Ergüner; Nico Pfeifer; Oliver Kohlbacher (Bioinform., 2021)