Empirical bayes modelling of expression profiles and their associations. - Belinda Phipson (2013)

missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform. - Belinda Phipson; Jovana Maksimovic; Alicia Oshlack (Bioinform., 2016)

A cross-package Bioconductor workflow for analysing methylation array data. - Jovana Maksimovic; Belinda Phipson; Alicia Oshlack (F1000Research, 2016)

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database. - Luke Zappia; Belinda Phipson; Alicia Oshlack (PLoS Comput. Biol., 2018)

propeller: testing for differences in cell type proportions in single cell data. - Belinda Phipson; Choon Boon Sim; Enzo R. Porrello; Alex W. Hewitt; Joseph E. Powell; Alicia Oshlack (Bioinform., 2022)