Imaging seizure-induced inflammation using an antibody targeted iron oxide contrast agent. - Ben A. Duffy; ManKin Choy; Johannes Riegler; Jack A. Wells; Daniel C. Anthony; Rod C. Scott; Mark F. Lythgoe (NeuroImage, 2012)

MRI compatible optrodes for simultaneous LFP and optogenetic fMRI investigation of seizure-like afterdischarges. - Ben A. Duffy; ManKin Choy; Miguel R. Chuapoco; Michael Madsen; Jin Hyung Lee (NeuroImage, 2015)

Structural abnormality of the hippocampus associated with depressive symptoms in heart failure rats. - Hideaki Suzuki; Akira Sumiyoshi; Yasuharu Matsumoto; Ben A. Duffy; Takeo Yoshikawa; Mark F. Lythgoe; Kazuhiko Yanai; Yasuyuki Taki; Ryuta Kawashima; Hiroaki Shimokawa (NeuroImage, 2015)

Comparison of fMRI analysis methods for heterogeneous BOLD responses in block design studies. - Jia Liu; Ben A. Duffy; David Bernal-Casas; Zhongnan Fang; Jin Hyung Lee (NeuroImage, 2017)

The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data. - Hosung Kim; Andrei Irimia; Sam Hobel; Mher Pogosyan; Haoteng Tang; Petros Petrosyan; Rita Esquivel Castelo Blanco; Ben A. Duffy; Lu Zhao; Karen L. Crawford; Sook-Lei Liew; Kristi Clark; et al. (Frontiers Neuroinformatics, 2019)

Carbon monofilament electrodes for unit recording and functional MRI in same subjects. - Miguel R. Chuapoco; ManKin Choy; Florian Schmid; Ben A. Duffy; Hyun Joo Lee; Jin Hyung Lee (NeuroImage, 2019)

Gradient Artifact Correction for Simultaneous EEG- fMRI using Denoising Autoencoders. - Ben A. Duffy; Arthur W. Toga; Hosung Kim (ISBI, 2020)

Deep Learning of Cortical Surface Features Using Graph-Convolution Predicts Neonatal Brain Age and Neurodevelopmental Outcome. - Mengting Liu; Ben A. Duffy; Zhe Sun; Arthur W. Toga; A. James Barkovich; Duan Xu; Hosung Kim (ISBI, 2020)

Learning to Synthesize Cortical Morphological Changes using Graph Conditional Variational Autoencoder. - Yaqiong Chai; Mengting Liu; Ben A. Duffy; Hosung Kim (ISBI, 2021)

Real-Time Video Denoising to Reduce Ionizing Radiation Exposure in Fluoroscopic Imaging. - Dave Van Veen; Ben A. Duffy; Long Wang; Keshav Datta; Tao Zhang; Greg Zaharchuk; Enhao Gong (MLMIR@MICCAI, 2021)

Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions. - Ben A. Duffy; Lu Zhao; Farshid Sepehrband; Joyce Min; Danny J. J. Wang; Yonggang Shi; Arthur W. Toga; Hosung Kim (NeuroImage, 2021)

White matter hyperintensities segmentation using the ensemble U-Net with multi-scale highlighting foregrounds. - Gilsoon Park; Jinwoo Hong; Ben A. Duffy; Jong-Min Lee; Hosung Kim (NeuroImage, 2021)

One Model to Synthesize Them All: Multi-Contrast Multi-Scale Transformer for Missing Data Imputation. - Jiang Liu 014; Srivathsa Pasumarthi; Ben A. Duffy; Enhao Gong; Keshav Datta; Greg Zaharchuk (IEEE Trans. Medical Imaging, 2023)