Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis. - Ben Berkhout (Nucleic Acids Res., 1992)

The restriction enzyme BanI is inhibited by dcm-methylation of the GGCGCm5C site. - Belinda B. Oude Essink; Ben Berkhout (Nucleic Acids Res., 1994)

Euclidean Distance Analysis Enables Nucleotide Skew Analysis in Viral Genomes. - Formijn van Hemert; Maarten Jebbink; L. Andries Van der Ark; Frits Scholer; Ben Berkhout (Comput. Math. Methods Medicine, 2018)

HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data. - Tanya Golubchik; Lucie Abeler-Dörner; Matthew Hall; Chris Wymant; David G. Bonsall; George Macintyre-Cockett; Laura Thomson; Jared M. Baeten; Connie L. Celum; Ronald Galiwango; Barry Kosloff; Mohammed Limbada; et al. (BMC Bioinform., 2025)