Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract). - Leonid Chindelevitch; Daniel Ziemek; Ahmed Enayetallah; Ranjit Randhawa; Ben Sidders; Christoph Brockel; Enoch S. Huang (RECOMB, 2011)

Causal reasoning on biological networks: interpreting transcriptional changes. - Leonid Chindelevitch; Daniel Ziemek; Ahmed Enayetallah; Ranjit Randhawa; Ben Sidders; Christoph Brockel; Enoch S. Huang (Bioinform., 2012)

Cataloging the biomedical world of pain through semi-automated curation of molecular interactions. - Daniel G. Jamieson; Phoebe M. Roberts; David L. Robertson; Ben Sidders; Goran Nenadic (Database J. Biol. Databases Curation, 2013)

Molecular causes of transcriptional response: a Bayesian prior knowledge approach. - Kourosh Zarringhalam; Ahmed Enayetallah; Alex Gutteridge; Ben Sidders; Daniel Ziemek (Bioinform., 2013)

Interpreting transcriptional changes using causal graphs: new methods and their practical utility on public networks. - Carl Tony Fakhry; Parul Choudhary; Alex Gutteridge; Ben Sidders; Ping Chen 001; Daniel Ziemek; Kourosh Zarringhalam (BMC Bioinform., 2016)

Identification of Intrinsic Drug Resistance and Its Biomarkers in High-Throughput Pharmacogenomic and CRISPR Screens. - Iñigo Ayestaran; Ana Galhoz; Elmar Spiegel; Ben Sidders; Jonathan R. Dry; Frank Dondelinger; Andreas Bender 002; Ultan McDermott; Francesco Iorio; Michael P. Menden (Patterns, 2020)