Integrated Feasibility Experiment for Bio-Security: IFE-Bio, A TIDES Demonstration. - Lynette Hirschman; Kris Concepcion; Laurie E. Damianos; David Day; John Delmore; Lisa Ferro; John Griffith; John C. Henderson; Jeffrey L. Kurtz; Inderjeet Mani; Scott A. Mardis; Tom McEntee; et al. (HLT, 2001)

Toward Conditional Models of Identity Uncertainty with Application to Proper Noun Coreference. - Andrew McCallum; Ben Wellner (IIWeb, 2003)

Conditional Models of Identity Uncertainty with Application to Noun Coreference. - Andrew McCallum; Ben Wellner (NIPS, 2004)

The MITRE logical form generation system. - Samuel Bayer; John D. Burger; Warren R. Greiff; Ben Wellner (SENSEVAL@ACL, 2004)

An Integrated, Conditional Model of Information Extraction and Coreference with Appli. - Ben Wellner; Andrew McCallum; Fuchun Peng; Michael Hay (UAI, 2004)

Weakly Supervised Learning Methods for Improving the Quality of Gene Name Normalization Data. - Ben Wellner (LBLODMBS@IDMB, 2005)

Adaptive String Similarity Metrics for Biomedical Reference Resolution. - Ben Wellner; José M. Castaño; James Pustejovsky (LBLODMBS@IDMB, 2005)

Machine Learning of Temporal Relations. - Inderjeet Mani; Marc Verhagen; Ben Wellner; Chong Min Lee; James Pustejovsky (ACL, 2006)

Maytag: A Multi-Staged Approach to Identifying Complex Events in Textual Data. - Conrad Chang; Lisa Ferro; John Gibson; Janet Hitzeman; Suzi Lubar; Justin Palmer; Sean Munson; Marc B. Vilain; Benjamin Wellner (EACL, 2006)

Leveraging Machine Readable Dictionaries in Discriminative Sequence Models. - Ben Wellner; Marc B. Vilain (LREC, 2006)

Classification of Discourse Coherence Relations: An Exploratory Study using Multiple Knowledge Sources. - Ben Wellner; James Pustejovsky; Catherine Havasi; Anna Rumshisky; Roser Saurí (SIGDIAL Workshop, 2006)

Reading comprehension tests for computer-based understanding evaluation. - Ben Wellner; Lisa Ferro; Warren R. Greiff; Lynette Hirschman (Nat. Lang. Eng., 2006)

Automatically Identifying the Arguments of Discourse Connectives. - Ben Wellner; James Pustejovsky (EMNLP-CoNLL, 2007)

Evaluating the Automatic Mapping of Human Gene and Protein Mentions to Unique Identifiers. - Alexander A. Morgan; Benjamin Wellner; Jeffrey B. Colombe; Robert Arens; Marc E. Colosimo; Lynette Hirschman (Pacific Symposium on Biocomputing, 2007)

Adaptive web-page content identification. - John Gibson; Ben Wellner; Susan Lubar (WIDM, 2007)

Research Paper: Rapidly Retargetable Approaches to De-identification in Medical Records. - Ben Wellner; Matt Huyck; Scott A. Mardis; John S. Aberdeen; Alexander A. Morgan; Leonid Peshkin; Alexander S. Yeh; Janet Hitzeman; Lynette Hirschman (J. Am. Medical Informatics Assoc., 2007)

SpatialML: Annotation Scheme, Corpora, and Tools. - Inderjeet Mani; Janet Hitzeman; Justin Richer; Dave Harris; Rob Quimby; Ben Wellner (LREC, 2008)

A simple feature-copying approach for long-distance dependencies. - Marc B. Vilain; Jonathan Huggins; Ben Wellner (CoNLL, 2009)

Sources of Performance in CRF Transfer Training: a Business Name-tagging Case Study. - Marc B. Vilain; Jonathan Huggins; Ben Wellner (RANLP, 2009)

The MITRE Identification Scrubber Toolkit: Design, training, and assessment. - John S. Aberdeen; Samuel Bayer; Reyyan Yeniterzi; Benjamin Wellner; Cheryl Clark; David A. Hanauer; Bradley A. Malin; Lynette Hirschman (Int. J. Medical Informatics, 2010)

Effects of personal identifier resynthesis on clinical text de-identification. - Reyyan Yeniterzi; John S. Aberdeen; Samuel Bayer; Benjamin Wellner; Lynette Hirschman; Bradley A. Malin (J. Am. Medical Informatics Assoc., 2010)

SpatialML: annotation scheme, resources, and evaluation. - Inderjeet Mani; Christy Doran; Dave Harris; Janet Hitzeman; Rob Quimby; Justin Richer; Ben Wellner; Scott A. Mardis; Seamus Clancy (Lang. Resour. Evaluation, 2010)

MITRE system for clinical assertion status classification. - Cheryl Clark; John S. Aberdeen; Matthew Coarr; David Tresner-Kirsch; Ben Wellner; Alexander S. Yeh; Lynette Hirschman (J. Am. Medical Informatics Assoc., 2011)

Validating Candidate Gene-Mutation Relations in MEDLINE Abstracts via Crowdsourcing. - John D. Burger; Emily Doughty; Samuel Bayer; David Tresner-Kirsch; Ben Wellner; John S. Aberdeen; Kyungjoon Lee; Maricel G. Kann; Lynette Hirschman (DILS, 2012)

An Integrated, Conditional Model of Information Extraction and Coreference with Applications to Citation Matching - Ben Wellner; Andrew McCallum; Fuchun Peng; Michael Hay (CoRR, 2012)

Bootstrapping a de-identification system for narrative patient records: Cost-performance tradeoffs. - David A. Hanauer; John S. Aberdeen; Samuel Bayer; Benjamin Wellner; Cheryl Clark; Kai Zheng 002; Lynette Hirschman (Int. J. Medical Informatics, 2013)

Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text. - David Carrell; Bradley A. Malin; John S. Aberdeen; Samuel Bayer; Cheryl Clark; Ben Wellner; Lynette Hirschman (J. Am. Medical Informatics Assoc., 2013)

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing. - John D. Burger; Emily Doughty; Ritu Khare; Chih-Hsuan Wei; Rajashree Mishra; John S. Aberdeen; David Tresner-Kirsch; Ben Wellner; Maricel G. Kann; Zhiyong Lu; Lynette Hirschman (Database J. Biol. Databases Curation, 2014)

MITRE at SemEval-2019 Task 5: Transfer Learning for Multilingual Hate Speech Detection. - Abigail S. Gertner; John C. Henderson; Elizabeth M. Merkhofer; Amy Marsh; Ben Wellner; Guido Zarrella (SemEval@NAACL-HLT, 2019)