Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. - Sebastian Dümcke; Johannes Bräuer; Benedict Anchang; Rainer Spang; Niko Beerenwinkel; Achim Tresch (Bioinform., 2014)

CCAST: A Model-Based Gating Strategy to Isolate Homogeneous Subpopulations in a Heterogeneous Population of Single Cells. - Benedict Anchang; Mary T. Do; Xi Zhao; Sylvia K. Plevritis (PLoS Comput. Biol., 2014)

Visualization, benchmarking and characterization of nested single-cell heterogeneity as dynamic forest mixtures. - Benedict Anchang; Raul Mendez-Giraldez; Xiaojiang Xu; Trevor K. Archer; Qing Chen; Guang Hu; Sylvia K. Plevritis; Alison Anne Motsinger-Reif; Jian-Liang Li (Briefings Bioinform., 2022)

A benchmark for prediction of transcriptomic responses to chemical perturbations across cell types. - Artur Szalata; Andrew Benz; Robrecht Cannoodt; Mauricio Cortes; Jason Fong; Sunil Kuppasani; Richard Lieberman; Tianyu Liu; Javier Mas-Rosario; Rico Meinl; Jalil Nourisa; Jared Tumiel; et al. (NeurIPS, 2024)

Model-based evaluation of spatiotemporal data reduction methods with unknown ground truth through optimal visualization and interpretability metrics. - Komlan Atitey; Alison A. Motsinger-Reif; Benedict Anchang (Briefings Bioinform., 2024)

Fusion of spatiotemporal and network models to prioritize multiscale effects in single-cell perturbations. - Osafu Augustine Egbon; John W. Hickey; Benedict Anchang (Briefings Bioinform., 2025)