Bayesian gene/species tree reconciliation and orthology analysis using MCMC. - Lars Arvestad; Ann-Charlotte Berglund; Jens Lagergren; Bengt Sennblad (ISMB (Supplement of Bioinformatics), 2003)

Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. - Lars Arvestad; Ann-Charlotte Berglund; Jens Lagergren; Bengt Sennblad (RECOMB, 2004)

primetv: a viewer for reconciled trees. - Bengt Sennblad; Eva Schreil; Ann-Charlotte Berglund Sonnhammer; Jens Lagergren; Lars Arvestad (BMC Bioinform., 2007)

The gene evolution model and computing its associated probabilities. - Lars Arvestad; Jens Lagergren; Bengt Sennblad (J. ACM, 2009)

DLRS: gene tree evolution in light of a species tree. - Joel Sjöstrand; Bengt Sennblad; Lars Arvestad; Jens Lagergren (Bioinform., 2012)

Genome-wide probabilistic reconciliation analysis across vertebrates. - Owais Mahmudi; Joel Sjöstrand; Bengt Sennblad; Jens Lagergren (BMC Bioinform., 2013)

GenPhyloData: realistic simulation of gene family evolution. - Joel Sjöstrand; Lars Arvestad; Jens Lagergren; Bengt Sennblad (BMC Bioinform., 2013)

Fast and general tests of genetic interaction for genome-wide association studies. - Mattias Frånberg; Rona J. Strawbridge; Anders Hamsten; PROCARDIS Consortium; Ulf de Faire; Jens Lagergren; Bengt Sennblad (PLoS Comput. Biol., 2017)