A Variational Framework for Joint Image Registration, Denoising and Edge Detection. - Jingfeng Han; Benjamin Berkels; Martin Rumpf; Joachim Hornegger; Marc Droske; Michael Fried; Jasmin Scorzin; Carlo Schaller (Bildverarbeitung für die Medizin, 2006)

A Variational Framework for Simultaneous Motion Estimation and Restoration of Motion-Blurred Video. - Leah Bar; Benjamin Berkels; Martin Rumpf; Guillermo Sapiro (ICCV, 2007)

Identification of Grain Boundary Contours at Atomic Scale. - Benjamin Berkels; Andreas Rätz; Martin Rumpf; Axel Voigt (SSVM, 2007)

Mumford-Shah Model for One-to-One Edge Matching. - Jingfeng Han; Benjamin Berkels; Marc Droske; Joachim Hornegger; Martin Rumpf; Carlo Schaller; Jasmin Scorzin; Horst Urbach (IEEE Trans. Image Process., 2007)

Shape Median Based on Symmetric Area Differences. - Benjamin Berkels; Gina Linkmann; Martin Rumpf (VMV, 2008)

Extracting Grain Boundaries and Macroscopic Deformations from Images on Atomic Scale. - Benjamin Berkels; Andreas Rätz; Martin Rumpf; Axel Voigt (J. Sci. Comput., 2008)

Reconstructing Optical Flow Fields by Motion Inpainting. - Benjamin Berkels; Claudia Kondermann; Christoph S. Garbe; Martin Rumpf (EMMCVPR, 2009)

An Unconstrained Multiphase Thresholding Approach for Image Segmentation. - Benjamin Berkels (SSVM, 2009)

Interactive Motion Segmentation. - Claudia Nieuwenhuis; Benjamin Berkels; Martin Rumpf; Daniel Cremers (DAGM-Symposium, 2010)

Convex Relaxation for Grain Segmentation at Atomic Scale. - Markus Boerdgen; Benjamin Berkels; Martin Rumpf; Daniel Cremers (VMV, 2010)

An SL(2) Invariant Shape Median. - Benjamin Berkels; Gina Linkmann; Martin Rumpf (J. Math. Imaging Vis., 2010)

Joint methods in imaging based on diffuse image representations. - Benjamin Berkels (2010)

Joint ToF Image Denoising and Registration with a CT Surface in Radiation Therapy. - Sebastian Bauer 001; Benjamin Berkels; Joachim Hornegger; Martin Rumpf (SSVM, 2011)

Sulci Detection in Photos of the Human Cortex Based on Learned Discriminative Dictionaries. - Benjamin Berkels; Marc Kotowski; Martin Rumpf; Carlo Schaller (SSVM, 2011)

Marker-Less Reconstruction of Dense 4-D Surface Motion Fields Using Active Laser Triangulation for Respiratory Motion Management. - Sebastian Bauer 001; Benjamin Berkels; Svenja Ettl; Oliver Arold; Joachim Hornegger; Martin Rumpf (MICCAI (1), 2012)

Co-Registration of Intra-Operative Photographs and Pre-Operative MR Images. - Benjamin Berkels; Ivan Cabrilo; Sven Haller; Martin Rumpf; Carlo Schaller (Bildverarbeitung für die Medizin, 2013)

Discrete Geodesic Regression in Shape Space. - Benjamin Berkels; P. Thomas Fletcher; Behrend Heeren; Martin Rumpf; Benedikt Wirth (EMMCVPR, 2013)

A Thin Shell Approach to the Registration of Implicit Surfaces. - José A. Iglesias 002; Benjamin Berkels; Martin Rumpf; Otmar Scherzer (VMV, 2013)

Cortical Surface Co-Registration based on MRI Images and Photos - Benjamin Berkels; Ivan Cabrilo; Sven Haller; Martin Rumpf; Carlo Schaller (CoRR, 2013)

Model-Based Parameterestimation in DCE-MRI Without an Arterial Input Function. - Constantin Heck; Lars Ruthotto; Jan Modersitzki; Benjamin Berkels (Bildverarbeitung für die Medizin, 2014)

Glomerular Filtration Rate Estimation from Dynamic Contrast-Enhanced MRI. - Anna K. Trull; Benjamin Berkels; Jan Modersitzki (Bildverarbeitung für die Medizin, 2014)

Non-local Means for Scanning Transmission Electron Microscopy Images and Poisson Noise based on Adaptive Periodic Similarity Search and Patch Regularization. - Niklas Mevenkamp; Andrew B. Yankovich; Paul M. Voyles; Benjamin Berkels (VMV, 2014)

Co-registration of intra-operative brain surface photographs and pre-operative MR images. - Benjamin Berkels; Ivan Cabrilo; Sven Haller; Martin Rumpf; Karl Schaller (Int. J. Comput. Assist. Radiol. Surg., 2014)

Optimized imaging using non-rigid registration. - Benjamin Berkels; Peter Binev; Douglas A. Blom; Wolfgang Dahmen; Robert C. Sharpley; Thomas Vogt (CoRR, 2014)

Image Registration with Sliding Motion Constraints for 4D CT Motion Correction. - Alexander Derksen; Stefan Heldmann; Thomas Polzin; Benjamin Berkels (Bildverarbeitung für die Medizin, 2015)

Unsupervised and Accurate Extraction of Primitive Unit Cells from Crystal Images. - Niklas Mevenkamp; Benjamin Berkels (GCPR, 2015)

Deformable Image Registration with Automatic Non-Correspondence Detection. - Kanglin Chen; Alexander Derksen; Stefan Heldmann; Marc Hallmann; Benjamin Berkels (SSVM, 2015)

An image registration framework for sliding motion with piecewise smooth deformations. - Stefan Heldmann; Thomas Polzin; Alexander Derksen; Benjamin Berkels (SSVM, 2015)

Time Discrete Geodesic Paths in the Space of Images. - Benjamin Berkels; Alexander Effland; Martin Rumpf (SIAM J. Imaging Sci., 2015)

Curve-to-Image Based Non-Rigid Registration of Digital Photos and Quantitative Light-Induced Fluorescence Images in Dentistry. - Benjamin Berkels; Thomas Martin Deserno; Eva E. Ehrlich; Ulrike B. Fritz; Ekaterina Sirazitdinova; Rosalia Tatano (Bildverarbeitung für die Medizin, 2016)

Non-rigid contour-to-pixel registration of photographic and quantitative light-induced fluorescence imaging of decalcified teeth. - Benjamin Berkels; Thomas Martin Deserno; Eva E. Ehrlich; Ulrike B. Fritz; Ekaterina Sirazitdinova; Rosalia Tatano (Image Processing, 2016)

Variational multi-phase segmentation using high-dimensional local features. - Niklas Mevenkamp; Benjamin Berkels (WACV, 2016)

Joint denoising and distortion correction of atomic scale scanning transmission electron microscopy images. - Benjamin Berkels; Benedikt Wirth (CoRR, 2016)

GPU-Based Image Geodesics for Optical Coherence Tomography. - Benjamin Berkels; Michael Buchner; Alexander Effland; Martin Rumpf; Steffen Schmitz-Valckenberg (Bildverarbeitung für die Medizin, 2017)

Mesh-to-raster based non-rigid registration of multi-modal images. - Rosalia Tatano; Benjamin Berkels; Thomas M. Deserno (CoRR, 2017)

Survey of Non-Rigid Registration Tools in Medicine. - András P. Keszei; Benjamin Berkels; Thomas M. Deserno (J. Digit. Imaging, 2017)

A posteriori error control for the binary Mumford-Shah model. - Benjamin Berkels; Alexander Effland; Martin Rumpf (Math. Comput., 2017)

Automation of Hemocompatibility Analysis Using Image Segmentation and a Random Forest. - Johanna C. Clauser; Judith Maas; Jutta Arens; Thomas Schmitz-Rode; Ulrich Steinseifer; Benjamin Berkels (CoRR, 2020)

Total Deep Variation for Noisy Exit Wave Reconstruction in Transmission Electron Microscopy. - Thomas Pinetz; Erich Kobler; Christian Doberstein; Benjamin Berkels; Alexander Effland (SSVM, 2021)

Polar Space Based Shape Averaging for Star-shaped Biological Objects. - Karina Ruzaeva; Katharina Nöh; Benjamin Berkels (VCBM, 2021)

Automation of hemocompatibility analysis using image segmentation and supervised classification. - Johanna C. Clauser; Judith Maas; Jutta Arens; Thomas Schmitz-Rode; Ulrich Steinseifer; Benjamin Berkels (Eng. Appl. Artif. Intell., 2021)

Automated Characterization of Catalytically Active Inclusion Body Production in Biotechnological Screening Systems. - Karina Ruzaeva; Kira Küsters; Wolfgang Wiechert; Benjamin Berkels; Marco Oldiges; Katharina Nöh (EMBC, 2022)

Cell tracking for live-cell microscopy using an activity-prioritized assignment strategy. - Karina Ruzaeva; Jan-Christopher Cohrs; Keitaro Kasahara; Dietrich Kohlheyer; Katharina Nöh; Benjamin Berkels (IPAS, 2022)

A Hybrid Multi-Object Segmentation Framework with Model-Based B-Splines for Microbial Single Cell Analysis. - Karina Ruzaeva; Katharina Nöh; Benjamin Berkels (ISBI, 2022)

Signal Processing for Advanced Materials [From the Guest Editors]. - Mary L. Comer; Jeff P. Simmons; Steve Niezgoda; Charles A. Bouman; Benjamin Berkels (IEEE Signal Process. Mag., 2022)

A Distribution-Dependent Mumford-Shah Model for Unsupervised Hyperspectral Image Segmentation. - Jan-Christopher Cohrs; Chandrajit Bajaj; Benjamin Berkels (IEEE Trans. Geosci. Remote. Sens., 2022)

Work-Stealing Prefix Scan: Addressing Load Imbalance in Large-Scale Image Registration. - Marcin Copik; Tobias Grosser; Torsten Hoefler; Paolo Bientinesi; Benjamin Berkels (IEEE Trans. Parallel Distributed Syst., 2022)

Direct Motif Extraction from High Resolution Crystalline STEM Images. - Amel Shamseldeen Ali Alhassan; Siyuan Zhang; Benjamin Berkels (CoRR, 2023)

A Generalization Bound for a Family of Implicit Networks. - Samy Wu Fung; Benjamin Berkels (CoRR, 2024)

On the importance of the ϵ-regularization of the distribution-dependent Mumford-Shah model for hyperspectral image segmentation. - Jan-Christopher Cohrs; Benjamin Berkels (CoRR, 2024)

Joint denoising and line distortion correction for raster-scanned image series. - Benjamin Berkels; Peter Binev (CoRR, 2024)