Image Synthesis with a Convolutional Capsule Generative Adversarial Network. - Cher Bass; Tianhong Dai; Benjamin Billot; Kai Arulkumaran; Antonia Creswell; Claudia Clopath; Vincenzo De Paola; Anil Anthony Bharath (MIDL, 2019)

Deep Reinforcement Learning for Subpixel Neural Tracking. - Tianhong Dai; Magda Dubois; Kai Arulkumaran; Jonathan Campbell; Cher Bass; Benjamin Billot; Fatmatülzehra Uslu; Vincenzo De Paola; Claudia Clopath; Anil Anthony Bharath (MIDL, 2019)

Partial Volume Segmentation of Brain MRI Scans of Any Resolution and Contrast. - Benjamin Billot; Eleanor D. Robinson; Adrian V. Dalca; Juan Eugenio Iglesias (MICCAI (7), 2020)

A Learning Strategy for Contrast-agnostic MRI Segmentation. - Benjamin Billot; Douglas N. Greve; Koen Van Leemput; Bruce Fischl; Juan Eugenio Iglesias; Adrian V. Dalca (MIDL, 2020)

Learning Multi-Modal Image Registration without Real Data. - Malte Hoffmann; Benjamin Billot; Juan Eugenio Iglesias; Bruce Fischl; Adrian V. Dalca (CoRR, 2020)

Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. - Juan Eugenio Iglesias; Benjamin Billot; Yaël Balbastre; Azadeh Tabari; John Conklin; Daniel C. Alexander; Polina Golland; Brian L. Edlow; Bruce Fischl (CoRR, 2020)

Automated segmentation of the hypothalamus and associated subunits in brain MRI. - Benjamin Billot; Martina Bocchetta; Emily Todd; Adrian V. Dalca; Jonathan D. Rohrer; Juan Eugenio Iglesias (NeuroImage, 2020)

Joint Segmentation Of Multiple Sclerosis Lesions And Brain Anatomy In MRI Scans Of Any Contrast And Resolution With CNNs. - Benjamin Billot; Stefano Cerri; Koen Van Leemput; Adrian V. Dalca; Juan Eugenio Iglesias (ISBI, 2021)

Learning Mri Contrast-Agnostic Registration. - Malte Hoffmann; Benjamin Billot; Juan Eugenio Iglesias; Bruce Fischl; Adrian V. Dalca (ISBI, 2021)

SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution. - Benjamin Billot; Douglas N. Greve; Oula Puonti; Axel Thielscher; Koen Van Leemput; Bruce Fischl; Adrian V. Dalca; Juan Eugenio Iglesias (CoRR, 2021)

A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. - Douglas N. Greve; Benjamin Billot; Devani Cordero; Andrew Hoopes; Malte Hoffmann; Adrian V. Dalca; Bruce Fischl; Juan Eugenio Iglesias; Jean C. Augustinack (NeuroImage, 2021)

Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. - Juan Eugenio Iglesias; Benjamin Billot; Yaël Balbastre; Azadeh Tabari; John Conklin; R. Gilberto González; Daniel C. Alexander; Polina Golland; Brian L. Edlow; Bruce Fischl (NeuroImage, 2021)

Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and No Retraining. - Benjamin Billot; Colin G. Magdamo; Steven E. Arnold; Sudeshna Das 001; Juan Eugenio Iglesias (MICCAI (5), 2022)

Accurate super-resolution low-field brain MRI. - Juan Eugenio Iglesias; Riana Schleicher; Sonia Laguna; Benjamin Billot; Pamela Schaefer; Brenna McKaig; Joshua N. Goldstein; Kevin N. Sheth; Matthew S. Rosen; W. Taylor Kimberly (CoRR, 2022)

Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining. - Benjamin Billot; Colin G. Magdamo; Sean E. Arnold; Sudeshna Das 001; Juan Eugenio Iglesias (CoRR, 2022)

Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets. - Benjamin Billot; Colin G. Magdamo; Steven E. Arnold; Sudeshna Das 001; Juan Eugenio Iglesias (CoRR, 2022)

SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images. - Malte Hoffmann; Benjamin Billot; Douglas N. Greve; Juan Eugenio Iglesias; Bruce Fischl; Adrian V. Dalca (IEEE Trans. Medical Imaging, 2022)

Domain-Agnostic Segmentation of Thalamic Nuclei from Joint Structural and Diffusion MRI. - Henry F. J. Tregidgo; Sonja Soskic; Mark D. Olchanyi; Juri Althonayan; Benjamin Billot; Chiara Maffei; Polina Golland; Anastasia Yendiki; Daniel C. Alexander; Martina Bocchetta; Jonathan D. Rohrer; Juan Eugenio Iglesias (MICCAI (8), 2023)

SE(3)-Equivariant and Noise-Invariant 3D Motion Tracking in Medical Images. - Benjamin Billot; Daniel Moyer; Neel Dey; Malte Hoffmann; Esra Abaci Turk; Borjan A. Gagoski; Patricia Ellen Grant; Polina Golland (CoRR, 2023)

SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining. - Benjamin Billot; Douglas N. Greve; Oula Puonti; Axel Thielscher; Koen Van Leemput; Bruce Fischl; Adrian V. Dalca; Juan Eugenio Iglesias (Medical Image Anal., 2023)

Quantifying White Matter Hyperintensity and Brain Volumes in Heterogeneous Clinical and Low-Field Portable MRI. - Pablo Laso; Stefano Cerri; Annabel Sorby-Adams; Jennifer Guo; Farrah Mateen; Philipp Goebl; Jiaming Wu; Peirong Liu; Hongwei Bran Li; Sean I. Young; Benjamin Billot; Oula Puonti; et al. (ISBI, 2024)

Network conditioning for synergistic learning on partial annotations. - Benjamin Billot; Neel Dey; Esra Abaci Turk; Ellen Grant; Polina Golland (MIDL, 2024)

AnyStar: Domain randomized universal star-convex 3D instance segmentation. - Neel Dey; S. Mazdak Abulnaga; Benjamin Billot; Esra Abaci Turk; Patricia Ellen Grant; Adrian V. Dalca; Polina Golland (WACV, 2024)

Towards Automatic Abdominal MRI Organ Segmentation: Leveraging Synthesized Data Generated From CT Labels. - Cosmin Ciausu; Deepa Krishnaswamy; Benjamin Billot; Steve Pieper 001; Ron Kikinis; Andrey Fedorov (CoRR, 2024)

A Constrast-Agnostic Method for Ultra-High Resolution Claustrum Segmentation. - Chiara Mauri; Ryan Fritz; Jocelyn Mora; Benjamin Billot; Juan Eugenio Iglesias; Koen Van Leemput; Jean Augustinack; Douglas N. Greve (CoRR, 2024)

SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRI. - Benjamin Billot; Neel Dey; Daniel Moyer; Malte Hoffmann; Esra Abaci Turk; Borjan A. Gagoski; Patricia Ellen Grant; Polina Golland (IEEE Trans. Medical Imaging, 2024)

Learning General-purpose Biomedical Volume Representations using Randomized Synthesis. - Neel Dey; Benjamin Billot; Hallee E. Wong; Clinton J. Wang; Mengwei Ren; Ellen Grant; Adrian V. Dalca; Polina Golland (ICLR, 2025)

Spatial regularisation for improved accuracy and interpretability in keypoint-based registration. - Benjamin Billot; Ramya Muthukrishnan; Esra Abaci Turk; Patricia Ellen Grant; Nicholas Ayache; Hervé Delingette; Polina Golland (CoRR, 2025)

Fetuses Made Simple: Modeling and Tracking of Fetal Shape and Pose. - Yingcheng Liu; Peiqi Wang; Sebastian Diaz; Esra Abaci Turk; Benjamin Billot; Patricia Ellen Grant; Polina Golland (CoRR, 2025)

Benchmarking of Deep Learning Methods for Generic MRI Multi-Organ Abdominal Segmentation. - Deepa Krishnaswamy; Cosmin Ciausu; Steven D. Pieper; Ron Kikinis; Benjamin Billot; Andrey Fedorov (CoRR, 2025)