Error, reproducibility and sensitivity : a pipeline for data processing of Agilent oligonucleotide expression arrays. - Benjamin Chain; Helen Bowen; John Hammond; Wilfried Posch; Jane Rasaiyaah; Jhen Tsang; Mahdad Noursadeghi (BMC Bioinform., 2010)

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine. - Niclas Thomas; James M. Heather; Wilfred Ndifon; John Shawe-Taylor; Benjamin Chain (Bioinform., 2013)

Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence. - Niclas Thomas; Katharine Best; Mattia Cinelli; Shlomit Reich-Zeliger; Hilah Gal; Eric Shifrut; Asaf Madi; Nir Friedman; John Shawe-Taylor; Benny Chain (Bioinform., 2014)

High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities. - James M. Heather; Mazlina Ismail; Theres Oakes; Benny Chain (Briefings Bioinform., 2018)

Correlated Feature Selection with Extended Exclusive Group Lasso. - Yuxin Sun; Benny Chain; Samuel Kaski; John Shawe-Taylor (CoRR, 2020)

Decombinator V4: an improved AIRR compliant-software package for T-cell receptor sequence annotation? - Thomas Peacock; James M. Heather; Tahel Ronel; Benny Chain (Bioinform., 2021)

Corrigendum to: Decombinator V4: an improved AIRR-C compliant software package for T-cell receptor sequence annotation. - Thomas Peacock; James M. Heather; Tahel Ronel; Benny Chain (Bioinform., 2022)

Executable network of SARS-CoV-2-host interaction predicts drug combination treatments. - Rowan S. M. Howell; Matthew A. Clarke; Ann-Kathrin Reuschl; Tianyi Chen; Sean Abbott-Imboden; Mervyn Singer; David M. Lowe; Clare L. Bennett; Benjamin Chain; Clare Jolly; Jasmin Fisher (npj Digit. Medicine, 2022)

Contrastive learning of T cell receptor representations. - Yuta Nagano; Andrew G. T. Pyo; Martina Milighetti; James Henderson; John Shawe-Taylor; Benny Chain; Andreas Tiffeau-Mayer (CoRR, 2024)

Data-driven Discovery of Biophysical T Cell Receptor Co-specificity Rules. - Andrew G. T. Pyo; Yuta Nagano; Martina Milighetti; James Henderson; Curtis G. Callan Jr.; Benny Chain; Ned S. Wingreen; Andreas Tiffeau-Mayer (CoRR, 2024)