iPfam: a database of protein family and domain interactions found in the Protein Data Bank. - Robert D. Finn; Benjamin L. Miller; Jody Clements; Alex Bateman (Nucleic Acids Res., 2014)

HMMER web server: 2015 update. - Robert D. Finn; Jody Clements; William Arndt; Benjamin L. Miller; Travis J. Wheeler; Fabian Schreiber; Alex Bateman; Sean R. Eddy (Nucleic Acids Res., 2015)

A Stable Biotin-Streptavidin Surface Enables Multiplex, Label-Free Protein Detection by Aptamer and Aptamer-Protein Arrays Using Arrayed Imaging Reflectometry. - Alanna M. Klose; Benjamin L. Miller (Sensors, 2020)

Monitoring Serum Spike Protein with Disposable Photonic Biosensors Following SARS-CoV-2 Vaccination. - John S. Cognetti; Benjamin L. Miller (Sensors, 2021)

Development of Methods for Specific Capture of Biological Targets on Aluminum Substrates: Application to Bacillus subtilis Spore Detection as a Model for Anthrax. - Ethan P. Luta; Benjamin L. Miller (Sensors, 2022)

Waveguide-Enhanced Raman Spectroscopy (WERS): An Emerging Chip-Based Tool for Chemical and Biological Sensing. - Pengyi Wang; Benjamin L. Miller (Sensors, 2022)

Feature Papers in Optical Sensors 2022. - Vittorio M. N. Passaro; Yuliya Semenova; Benjamin L. Miller (Sensors, 2023)