Evaluation of metagenome binning: advances and challenges. - Arangasamy Yazhini; Étienne Morice; Annika Jochheim; Benjamin Lieser; Johannes Söding (Briefings Bioinform., 2025)

Phylograd: fast column-specific calculation of substitution model gradients. - Benjamin Lieser; Georgy Belousov; Johannes Söding (BMC Bioinform., 2026)