OrthoInspector: comprehensive orthology analysis and visual exploration. - Benjamin Linard; Julie Dawn Thompson; Olivier Poch; Odile Lecompte (BMC Bioinform., 2011)

KD4v: comprehensible knowledge discovery system for missense variant. - Tien-Dao Luu; Alin Rusu; Vincent Walter; Benjamin Linard; Laetitia Poidevin; Raymond Ripp; Luc Moulinier; Jean Muller; Wolfgang Raffelsberger; Nicolas Wicker; Odile Lecompte; Julie Dawn Thompson; et al. (Nucleic Acids Res., 2012)

Development of evolutionary knowledge extraction methods and their application in biological complex systems. (Développement de méthodes évolutionnaires d'extraction de connaissance et application à des systèmes biologiques complexes). - Benjamin Linard (2012)

OrthoInspector 2.0: Software and database updates. - Benjamin Linard; Alexis Allot; Raphael Schneider; Can Morel; Raymond Ripp; Marc Bigler; Julie Dawn Thompson; Olivier Poch; Odile Lecompte (Bioinform., 2015)

Rapid alignment-free phylogenetic identification of metagenomic sequences. - Benjamin Linard; Krister M. Swenson; Fabio Pardi (Bioinform., 2019)

OrthoInspector 3.0: open portal for comparative genomics. - Yannis Nevers; Arnaud Kress; Audrey Defosset; Raymond Ripp; Benjamin Linard; Julie Dawn Thompson; Olivier Poch; Odile Lecompte (Nucleic Acids Res., 2019)

PEWO: a collection of workflows to benchmark phylogenetic placement. - Benjamin Linard; Nikolai Romashchenko; Fabio Pardi; Eric Rivals (Bioinform., 2021)

Rapid screening and detection of inter-type viral recombinants using phylo-k-mers. - Guillaume E. Scholz; Benjamin Linard; Nikolai Romashchenko; Eric Rivals; Fabio Pardi (Bioinform., 2021)

The Quest for Orthologs orthology benchmark service in 2022. - Yannis Nevers; Tamsin E. M. Jones; Dushyanth Jyothi; Bethan Yates; Meritxell Ferret; Laura Portell-Silva; Laia Codó; Salvatore Cosentino; Marina Marcet-Houben; Anna Vlasova; Laetitia Poidevin; Arnaud Kress; et al. (Nucleic Acids Res., 2022)

Computing Phylo-$k$k-Mers. - Nikolai Romashchenko; Benjamin Linard; Eric Rivals; Fabio Pardi (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

EPIK: precise and scalable evolutionary placement with informative k-mers. - Nikolai Romashchenko; Benjamin Linard; Fabio Pardi; Eric Rivals (Bioinform., 2023)