Optimized buffer allocation in multicore platforms. - Maximilian Odendahl; Andres Goens; Rainer Leupers; Gerd Ascheid; Benjamin Ries; Berthold Vöcking; Tomas Henriksson (DATE, 2014)

A heuristic for logical data buffer allocation in multicore platforms. - Benjamin Ries; Walter Unger; Maximilian Odendahl; Rainer Leupers (IPCCC, 2014)

The k-Observer Problem on d-regular Graphs. - Benjamin Ries; Bernhard Schamberg; Walter Unger (SSS, 2015)

Rationalization of the Membrane Permeability Differences in a Series of Analogue Cyclic Decapeptides. - Jagna Witek; Shuzhe Wang; Benjamin Schroeder 002; Robin Lingwood; Andreas Dounas; Hans-Jörg Roth; Marianne Fouché; Markus Blatter; Oliver Lemke; Bettina G. Keller; Sereina Riniker (J. Chem. Inf. Model., 2019)

An Alternative to Conventional λ-Intermediate States in Alchemical Free Energy Calculations: λ-Enveloping Distribution Sampling. - Gerhard König; Nina Glaser; Benjamin Schroeder 002; Alzbeta Kubincová; Philippe H. Hünenberger; Sereina Riniker (J. Chem. Inf. Model., 2020)

Ensembler: A Simple Package for Fast Prototyping and Teaching Molecular Simulations. - Benjamin Ries; Stephanie M. Linker; David F. Hahn; Gerhard König; Sereina Riniker (J. Chem. Inf. Model., 2021)

Relative free-energy calculations for scaffold hopping-type transformations with an automated RE-EDS sampling procedure. - Benjamin Ries; Karl Normak; R. Gregor Weiß; Salomé Rieder; Emília P. Barros; Candide Champion; Gerhard König; Sereina Riniker (J. Comput. Aided Mol. Des., 2022)

RestraintMaker: a graph-based approach to select distance restraints in free-energy calculations with dual topology. - Benjamin Ries; Salomé Rieder; Clemens Rhiner; Philippe H. Hünenberger; Sereina Riniker (J. Comput. Aided Mol. Des., 2022)

Replica-Exchange Enveloping Distribution Sampling Using Generalized AMBER Force-Field Topologies: Application to Relative Hydration Free-Energy Calculations for Large Sets of Molecules. - Salomé Rieder; Benjamin Ries; Kay Schaller; Candide Champion; Emília P. Barros; Philippe H. Hünenberger; Sereina Riniker (J. Chem. Inf. Model., 2022)

Accounting for Solvation Correlation Effects on the Thermodynamics of Water Networks in Protein Cavities. - Emília P. Barros; Benjamin Ries; Candide Champion; Salomé Rieder; Sereina Riniker (J. Chem. Inf. Model., 2023)

Accelerating Alchemical Free Energy Prediction Using a Multistate Method: Application to Multiple Kinases. - Candide Champion; René Gall; Benjamin Ries; Salomé Rieder; Emília P. Barros; Sereina Riniker (J. Chem. Inf. Model., 2023)

Automated Absolute Binding Free Energy Calculation Workflow for Drug Discovery. - Benjamin Ries; Irfan Alibay; Nithishwer Mouroug Anand; Philip C. Biggin; Aniket Magarkar (J. Chem. Inf. Model., 2024)

Konnektor: A Framework for Using Graph Theory to Plan Networks for Free Energy Calculations. - Benjamin Ries; Richard J. Gowers; Hannah M. Baumann; David W. H. Swenson; Michael M. Henry; James R. B. Eastwood; Irfan Alibay; David L. Mobley (J. Chem. Inf. Model., 2024)

Moldrug algorithm for an automated ligand binding site exploration by 3D aware molecular enumerations. - Alejandro Martínez León; Benjamin Ries; Jochen S. Hub; Aniket Magarkar (J. Cheminformatics, 2025)