NAISR: A 3D Neural Additive Model for Interpretable Shape Representation. - Yining Jiao; Carlton J. Zdanski; Julia S. Kimbell; Andrew Prince; Cameron Worden; Samuel Kirse; Christopher Rutter; Benjamin Shields; William Dunn; Jisan Mahmud; Marc Niethammer (ICLR, 2024)

MDFit: automated molecular simulations workflow enables high throughput assessment of ligands-protein dynamics. - Alexander C. Brueckner; Benjamin Shields; Palani Kirubakaran; Alexander Suponya; Manoranjan Panda; Shana L. Posy; Stephen R. Johnson; Sirish Kaushik Lakkaraju (J. Comput. Aided Mol. Des., 2024)

LucidAtlas$: Learning Uncertainty-Aware, Covariate-Disentangled, Individualized Atlas Representations. - Yining Jiao; Sreekalyani Bhamidi; Huaizhi Qu; Carlton J. Zdanski; Julia S. Kimbell; Andrew Prince; Cameron Worden; Samuel Kirse; Christopher Rutter; Benjamin Shields; William Dunn; Jisan Mahmud; et al. (CoRR, 2025)