Tetranucleotide usage in mycobacteriophage genomes: alignment-free methods to cluster phage and infer evolutionary relationships. - Benjamin Siranosian; Emma Herold; Edward Williams; Chen Ye; Christopher de Graffenried (BMC Bioinform., 2015)

Tetranucleotide usage highlights genomic heterogeneity among mycobacteriophages. - Benjamin Siranosian; Sudheesha Perera; Edward Williams; Chen Ye; Christopher de Graffenried; Peter Shank (F1000Research, 2015)

Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patient. - Joyce Kang; Benjamin Siranosian; Eli Moss; Tessa Andermann; Ami Bhatt (BIBM, 2018)

Reflections on a journey: a retrospective of the ISCB Student Council symposium series. - Mehedi Hassan; Aishwarya Alex Namasivayam; Dan F. DeBlasio; Nazeefa Fatima; Benjamin Siranosian; R. Gonzalo Parra; Bart Cuypers; Sayane Shome; Alexander Miguel Monzon; Julien Fumey; Farzana Rahman (BMC Bioinform., 2018)

Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly. - Joyce Kang; Benjamin Siranosian; Eli Moss; Niaz Banaei; Tessa Andermann; Ami Bhatt (BMC Bioinform., 2019)