A survey and evaluations of histogram-based statistics in alignment-free sequence comparison. - Brian B. Luczak; Benjamin T. James; Hani Z. Girgis (Briefings Bioinform., 2019)

Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models. - Alfredo Velasco II; Benjamin T. James; Vincent D. Wells; Hani Z. Girgis (Bioinform., 2020)