GenoScan: Genomic Scanner for Putative miRNA Precursors. - Benjamin Ulfenborg; Karin Klinga-Levan; Björn Olsson (ISBRA, 2014)

Genome-wide discovery of miRNAs using ensembles of machine learning algorithms and logistic regression. - Benjamin Ulfenborg; Karin Klinga-Levan; Björn Olsson (Int. J. Data Min. Bioinform., 2015)

Vertical and horizontal integration of multi-omics data with miodin. - Benjamin Ulfenborg (BMC Bioinform., 2019)

Multimodal deep learning for biomedical data fusion: a review. - Sören Richard Stahlschmidt; Benjamin Ulfenborg; Jane Synnergren (Briefings Bioinform., 2022)

Predicting Cancer Stage from Circulating microRNA: A Comparative Analysis of Machine Learning Algorithms. - Sören Richard Stahlschmidt; Benjamin Ulfenborg; Jane Synnergren (IWBBIO (1), 2023)

Domain Generalization of Deep Learning Models Under Subgroup Shift in Breast Cancer Prognosis. - Sören Richard Stahlschmidt; Benjamin Ulfenborg; Göran Falkman; Jane Synnergren (CIBCB, 2024)