A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. - Dannie Durand; Bjarni V. Halldórsson; Benjamin Vernot (J. Comput. Biol., 2006)

Reconciliation with Non-Binary Species Trees. - Benjamin Vernot; Maureen Stolzer; Aiton Goldman; Dannie Durand (J. Comput. Biol., 2008)

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees. - Maureen Stolzer; Han Lai; Minli Xu; Deepa Sathaye; Benjamin Vernot; Dannie Durand (Bioinform., 2012)

admixr - R package for reproducible analyses using ADMIXTOOLS. - Martin Petr; Benjamin Vernot; Janet Kelso (Bioinform., 2019)