ECG beat classification using particle swarm optimization and radial basis function neural network. - Mehmet Korürek; Berat Dogan (Expert Syst. Appl., 2010)

ECG beat clustering using fuzzy c-means algorithm and particle swarm optimization. - Berat Dogan; Mehmet Korürek (SIU, 2012)

A new ECG beat clustering method based on kernelized fuzzy c-means and hybrid ant colony optimization for continuous domains. - Berat Dogan; Mehmet Korürek (Appl. Soft Comput., 2012)

Fuzzy Clustering of ECG Beats Using a New Metaheuristic Approach. - Berat Dogan; Tamer Ölmez (IWBBIO, 2014)

Analog filter group delay optimization using the Vortex Search algorithm. - Berat Dogan; Ayhan Yüksel (SIU, 2015)

Segmentation of brain MRI images by using type-II fuzzy clustering algorithm. - Ipek Toker; Berat Dogan; Sedef Kent Pinar (SIU, 2015)

A novel state space representation for the solution of 2D-HP protein folding problem using reinforcement learning methods. - Berat Dogan; Tamer Ölmez (Appl. Soft Comput., 2015)

A new metaheuristic for numerical function optimization: Vortex Search algorithm. - Berat Dogan; Tamer Ölmez (Inf. Sci., 2015)

Optimized spatial filters as a new method for mass spectrometry-based cancer diagnosis. - Berat Dogan (Appl. Soft Comput., 2016)

A Modified Vortex Search Algorithm for Numerical Function Optimization. - Berat Dogan (CoRR, 2016)

Protein-RNA Interaction Prediction Using Graphical Representation of Biological Sequences. - Berat Dogan (SIU, 2019)

scMAGS: Marker gene selection from scRNA-seq data for spatial transcriptomics studies. - Yusuf Baran; Berat Dogan (Comput. Biol. Medicine, 2023)

CBMAP: Clustering-Based Manifold Approximation and Projection for Dimensionality Reduction. - Berat Dogan (IEEE Access, 2025)

Building Foundations for Natural Language Processing of Historical Turkish: Resources and Models. - Saziye Betül Özates; Tarik Emre Tiras; Ece Elif Adak; Berat Dogan; Fatih Burak Karagöz; Efe Eren Genç; Esma F. Bilgin Tasdemir (CoRR, 2025)