Labeling the pulmonary arterial tree in CT images for automatic quantification of pulmonary embolism. - Ralph J. M. Peters; Henk A. Marquering; Halil Dogan; Emile A. Hendriks; Albert de Roos; Johan H. C. Reiber; Berend C. Stoel (Computer-Aided Diagnosis, 2007)

Towards local estimation of emphysema progression using image registration. - Marius Staring; M. Els Bakker; Denis P. Shamonin; Jan Stolk; Johan H. C. Reiber; Berend C. Stoel (Image Processing, 2009)

A Strain Energy Filter for 3D Vessel Enhancement. - Changyan Xiao; Marius Staring; Denis P. Shamonin; Johan H. C. Reiber; Jan Stolk; Berend C. Stoel (MICCAI (3), 2010)

A strain energy filter for 3D vessel enhancement with application to pulmonary CT images. - Changyan Xiao; Marius Staring; Denis P. Shamonin; Johan H. C. Reiber; Jan Stolk; Berend C. Stoel (Medical Image Anal., 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. - Keelin Murphy; Bram van Ginneken; Joseph M. Reinhardt; Sven Kabus; Kai Ding 003; Xiang Deng; Kunlin Cao; Kaifang Du; Gary E. Christensen; Vincent Garcia; Tom Vercauteren; Nicholas Ayache; et al. (IEEE Trans. Medical Imaging, 2011)

Local SIMPLE multi atlas-based segmentation applied to lung lobe detection on chest CT. - Maruti Agarwal; Emile A. Hendriks; Berend C. Stoel; M. Els Bakker; Johan H. C. Reiber; Marius Staring (Image Processing, 2012)

Automatic lung lobe segmentation of COPD patients using iterative B-spline fitting. - Denis P. Shamonin; Marius Staring; M. Els Bakker; Changyan Xiao; Jan Stolk; Johan H. C. Reiber; Berend C. Stoel (Image Processing, 2012)

A derivative of stick filter for pulmonary fissure detection in CT images. - Changyan Xiao; Marius Staring; Juan Wang; Denis P. Shamonin; Berend C. Stoel (Image Processing, 2013)

Multiscale Bi-Gaussian Filter for Adjacent Curvilinear Structures Detection With Application to Vasculature Images. - Changyan Xiao; Marius Staring; Yaonan Wang 001; Denis P. Shamonin; Berend C. Stoel (IEEE Trans. Image Process., 2013)

Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study. - Rina Dewi Rudyanto; Sjoerd Kerkstra; Eva M. van Rikxoort; Catalin I. Fetita; Pierre-Yves Brillet; Christophe Lefevre; Wenzhe Xue; Xiangjun Zhu; Jianming Liang; Ilkay Öksüz; Devrim Ünay; Kamuran Kadipasaoglu; et al. (Medical Image Anal., 2014)

Lung vessel segmentation in CT images using graph cuts. - Zhiwei Zhai; Marius Staring; Berend C. Stoel (Image Processing, 2016)

A fluoroscopy-based planning and guidance software tool for minimally invasive hip refixation by cement injection. - Daniel F. Malan; Stefan Johann van der Walt; Renata G. Raidou; Bas van den Berg; Berend C. Stoel; Charl P. Botha; Rob G. H. H. Nelissen; Edward R. Valstar (Int. J. Comput. Assist. Radiol. Surg., 2016)

Pulmonary Fissure Detection in CT Images Using a Derivative of Stick Filter. - Changyan Xiao; Berend C. Stoel; M. Els Bakker; Yuanyuan Peng; Jan Stolk; Marius Staring (IEEE Trans. Medical Imaging, 2016)

Pulmonary Vessel Tree Matching for Quantifying Changes in Vascular Morphology. - Zhiwei Zhai; Marius Staring; Hideki Ota; Berend C. Stoel (MICCAI (2), 2018)

Linking Convolutional Neural Networks with Graph Convolutional Networks: Application in Pulmonary Artery-Vein Separation. - Zhiwei Zhai; Marius Staring; Xuhui Zhou; Qiuxia Xie; Xiaojuan Xiao; M. Els Bakker; Lucia J. M. Kroft; Boudewijn P. F. Lelieveldt; Gudula J. A. M. Boon; Frederikus A. Klok; Berend C. Stoel (GLMI@MICCAI, 2019)

Registration of vascular structures using a hybrid mixture model. - Siming Bayer; Zhiwei Zhai; Maddalena Strumia; Xiaoguang Tong; Ying Gao; Marius Staring; Berend C. Stoel; Rebecca Fahrig; Arya Nabavi; Andreas Maier 001; Nishant Ravikumar (Int. J. Comput. Assist. Radiol. Surg., 2019)

A framework for pulmonary fissure segmentation in 3D CT images using a directional derivative of plate filter. - Hong Zhao; Berend C. Stoel; Marius Staring; M. Els Bakker; Jan Stolk; Ping Zhou; Changyan Xiao (Signal Process., 2020)

Multi-Task Semi-Supervised Learning For Pulmonary Lobe Segmentation. - Jingnan Jia; Zhiwei Zhai; M. Els Bakker; Irene Hernández-Girón; Marius Staring; Berend C. Stoel (ISBI, 2021)

Optimization of hepatic vasculature segmentation from contrast-enhanced MRI, exploring two 3D Unet modifications and various loss functions. - Oleksandra V. Ivashchenko; Zhiwei Zhai; Berend C. Stoel; Theodoor Jacques Marie Ruers (Image-Guided Procedures, 2021)

Prediction of lung CT scores of systemic sclerosis by cascaded regression neural networks. - Jingnan Jia; Marius Staring; Irene Hernández-Girón; Lucia J. M. Kroft; Anne A. Schouffoer; Berend C. Stoel (Computer-Aided Diagnosis, 2022)

Automatic Pulmonary Function Estimation From Chest CT Scans Using Deep Regression Neural Networks: The Relation Between Structure and Function in Systemic Sclerosis. - Jingnan Jia; Emiel R. Marges; Jeska K. De Vries-Bouwstra; Maarten K. Ninaber; Lucia J. M. Kroft; Anne A. Schouffoer; Marius Staring; Berend C. Stoel (IEEE Access, 2023)

Using 3D point cloud and graph-based neural networks to improve the estimation of pulmonary function tests from chest CT. - Jingnan Jia; Bo Yu 013; Prerak Mody; Maarten K. Ninaber; Anne A. Schouffoer; Jeska K. De Vries-Bouwstra; Lucia J. M. Kroft; Marius Staring; Berend C. Stoel (Comput. Biol. Medicine, 2024)

Seg-metrics: a Python package to compute segmentation metrics. - Jingnan Jia; Marius Staring; Berend C. Stoel (CoRR, 2024)

Integrated feature analysis for deep learning interpretation and class activation maps. - Yanli Li; Tahereh Hassanzadeh; Denis P. Shamonin; Monique Reijnierse; Annette H. M. van der Helm-van Mil; Berend C. Stoel (CoRR, 2024)

A deep learning-based comparative MRI model to detect inflammatory changes in rheumatoid arthritis. - Tahereh Hassanzadeh; Denis P. Shamonin; Yanli Li; Doortje I. Krijbolder; Monique Reijnierse; Annette H. M. van der Helm-van Mil; Berend C. Stoel (Biomed. Signal Process. Control., 2024)