An alife game to teach evolution of antibiotic resistance. - Guillaume Beslon; Bérénice Batut; David P. Parsons; Dominique Schneider; Carole Knibbe (ECAL, 2013)

In silico experimental evolution: a tool to test evolutionary scenarios. - Bérénice Batut; David P. Parsons; Stephan Fischer 002; Guillaume Beslon; Carole Knibbe (BMC Bioinform., 2013)

Four simple recommendations to encourage best practices in research software. - Rafael C. Jiménez; Mateusz Kuzak; Monther Alhamdoosh; Michelle Barker; Bérénice Batut; Mikael Borg; Salvador Capella-Gutiérrez; Neil P. Chue Hong; Martin Cook; Manuel Corpas; Madison Flannery; Leyla J. García; et al. (F1000Research, 2017)

ENASearch: A Python library for interacting with ENA's API. - Bérénice A. Batut; Björn A. Grüning (J. Open Source Softw., 2017)

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. - Björn A. Grüning; Jörg Fallmann; Dilmurat Yusuf; Sebastian Will; Anika Erxleben; Florian Eggenhofer; Torsten Houwaart; Bérénice Batut; Pavankumar Videm; Andrea Bagnacani; Markus Wolfien; Steffen Lott; et al. (Nucleic Acids Res., 2017)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update. - Enis Afgan; Dannon Baker; Bérénice Batut; Marius van den Beek; Dave Bouvier; Martin Cech; John Chilton; Dave Clements; Nate Coraor; Björn A. Grüning; Aysam Guerler; Jennifer Hillman-Jackson; et al. (Nucleic Acids Res., 2018)

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. - Daniel Wibberg; Bérénice Batut; Peter Belmann; Jochen Blom; Frank Oliver Glöckner; Björn A. Grüning; Nils Hoffmann; Nils Kleinbölting; René Rahn; Maja Rey; Uwe Scholz; Malvika Sharan; et al. (F1000Research, 2019)

The RNA workbench 2.0: next generation RNA data analysis. - Jörg Fallmann; Pavankumar Videm; Andrea Bagnacani; Bérénice Batut; Maria A. Doyle; Tomas Klingström; Florian Eggenhofer; Peter F. Stadler; Rolf Backofen; Björn A. Grüning (Nucleic Acids Res., 2019)

Ten simple rules for making training materials FAIR. - Leyla J. García; Bérénice Batut; Melissa L. Burke; Mateusz Kuzak; Fotis E. Psomopoulos; Ricardo Arcila; Teresa K. Attwood; Niall Beard; Denise Carvalho-Silva; Alexandros C. Dimopoulos; Victoria Dominguez Del Angel; Michel Dumontier; et al. (PLoS Comput. Biol., 2020)

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. - Subina P. Mehta; Marie Crane; Emma Leith; Bérénice Batut; Saskia D. Hiltemann; Magnus Ø. Arntzen; Benoît Josef Kunath; Francesco Delogu; Ray Sajulga; Praveen Kumar; James E. Johnson; Timothy J. Griffin; et al. (F1000Research, 2021)

Fostering accessible online education using Galaxy as an e-learning platform. - Beatriz Serrano-Solano; Melanie Christine Föll; Cristóbal Gallardo-Alba; Anika Erxleben; Helena Rasche; Saskia D. Hiltemann; Matthias Fahrner; Mark J. Dunning; Marcel H. Schulz; Beáta Scholtz; Dave Clements; Anton Nekrutenko; et al. (PLoS Comput. Biol., 2021)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)

FAIR and Scalable Education The Galaxy Training Network (GTN) and a Training Infrastructure as a Service (TIaaS). - Anika Erxleben-Eggenhofer; Bérénice Batut; Teresa Müller (CoRDI, 2023)

Galaxy Training: A powerful framework for teaching! - Saskia D. Hiltemann; Helena Rasche; Simon L. Gladman; Hans-Rudolf Hotz; Delphine Larivière; Daniel J. Blankenberg; Pratik D. Jagtap; Thomas Wollmann; Anthony Bretaudeau; Nadia Goué; Timothy J. Griffin; Coline Royaux; et al. (PLoS Comput. Biol., 2023)