OnTarget: A tool for analysing enrichment data derived from next generation sequencing. - Agnes Hotz-Wagenblatt; Ilia Kats; Karl-Heinz Glatting; Maren Scharfenberger-Schmeer; Berit Haldemann (ISDA, 2011)

Data Management Challenges in Next Generation Sequencing. - Sebastian Wandelt; Astrid Rheinländer; Marc Bux; Lisa Thalheim; Berit Haldemann; Ulf Leser (Datenbank-Spektrum, 2012)

Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences. - Jan Grau; Jens Keilwagen; André Gohr; Berit Haldemann; Stefan Posch; Ivo Grosse (J. Mach. Learn. Res., 2012)

Comparative assessment of differential network analysis methods. - Yvonne Lichtblau; Karin Zimmermann; Berit Haldemann; Dido Lenze; Michael Hummel; Ulf Leser (Briefings Bioinform., 2017)