Specialisation of Higher-Order Functions for Debugging. - Bernard J. Pope; Lee Naish (WFLP, 2001)

A Program Transformation for Debugging Haskell 98. - Bernard J. Pope; Lee Naish (ACSC, 2003)

Practical aspects of declarative debugging in Haskell 98. - Bernard J. Pope; Lee Naish (PPDP, 2003)

Declarative Debugging with Buddha. - Bernard J. Pope (Advanced Functional Programming, 2004)

A lightweight interactive debugger for haskell. - Simon Marlow; José Iborra; Bernard J. Pope; Andy Gill (Haskell, 2007)

A declarative debugger for Haskell. - Bernard J. Pope (2007)

Petascale computation performance of lightweight multiscale cardiac models using hybrid programming models. - Bernard J. Pope; Blake G. Fitch; Michael C. Pitman; John Jeremy Rice; Matthias Reumann (EMBC, 2011)

Performance of Hybrid Programming Models for Multiscale Cardiac Simulations: Preparing for Petascale Computation. - Bernard J. Pope; Blake G. Fitch; Michael Pitman; John Jeremy Rice; Matthias Reumann (IEEE Trans. Biomed. Eng., 2011)

Bpipe: a tool for running and managing bioinformatics pipelines. - Simon P. Sadedin; Bernard J. Pope; Alicia Oshlack (Bioinform., 2012)

FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets. - Bernard J. Pope; Tu Nguyen-Dumont; Fabrice Odefrey; Russell Bell; Sean V. Tavtigian; David E. Goldgar; Andrew Lonie; Melissa C. Southey; Daniel J. Park (BMC Bioinform., 2013)

Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database. - Daniel J. Park; Tu Nguyen-Dumont; Sori Kang; Karin Verspoor; Bernard J. Pope (Source Code Biol. Medicine, 2014)

ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets. - Bernard J. Pope; Tu Nguyen-Dumont; Fleur Hammet; Daniel J. Park (Source Code Biol. Medicine, 2014)

UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing. - Daniel J. Park; Roger Li; Edmund Lau; Peter Georgeson; Tu Nguyen-Dumont; Bernard J. Pope (BMC Bioinform., 2016)

MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing. - Nicholas C. Wong; Bernard J. Pope; Ida L. Candiloro; Darren Korbie; Matt Trau; Stephen Q. Wong; Thomas Mikeska; Xinmin Zhang; Mark Pitman; Stefanie Eggers; Stephen R. Doyle; Alexander Dobrovic (BMC Bioinform., 2016)

Best practice data life cycle approaches for the life sciences. - Philippa C. Griffin; Jyoti Khadake; Kate S. LeMay; Suzanna E. Lewis; Sandra E. Orchard; Andrew Pask; Bernard J. Pope; Ute Roessner; Keith Russell; Torsten Seemann; Andrew E. Treloar; Sonika Tyagi; et al. (F1000Research, 2017)

Four simple recommendations to encourage best practices in research software. - Rafael C. Jiménez; Mateusz Kuzak; Monther Alhamdoosh; Michelle Barker; Bérénice Batut; Mikael Borg; Salvador Capella-Gutiérrez; Neil P. Chue Hong; Martin Cook; Manuel Corpas; Madison Flannery; Leyla J. García; et al. (F1000Research, 2017)

HiTIME: An efficient model-selection approach for the detection of unknown drug metabolites in LC-MS data. - Michael G. Leeming; Andrew Paul Isaac; Luke Zappia; Richard A. J. O'hair; William A. Donald; Bernard J. Pope (SoftwareX, 2020)