The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. - Jing-Woei Li; Dan M. Bolser; Magnus Manske; Federico Manuel Giorgi; Nikolay Vyahhi; Björn Usadel; Bernardo J. Clavijo; Ting-Fung Chan; Nathalie Wong; Daniel R. Zerbino; Maria Victoria Schneider (Briefings Bioinform., 2013)

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries. - Richard M. Leggett; Bernardo J. Clavijo; Leah Clissold; Matthew D. Clark; Mario Cáccamo (Bioinform., 2014)

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies. - Daniel Mapleson; Gonzalo Garcia Accinelli; George Kettleborough; Jonathan Wright; Bernardo J. Clavijo (Bioinform., 2017)

ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data. - Sergio Gonzalez; Bernardo J. Clavijo; Máximo Rivarola; Patricio Moreno; Paula Fernandez; Joaquín Dopazo; Norma Paniego (BMC Bioinform., 2017)