Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome. - Bernardo P. de Almeida; André F. Vieira; Joana Paredes; Mónica Bettencourt-Dias; Nuno L. Barbosa-Morais (PLoS Comput. Biol., 2019)

Multi-modal Transfer Learning between Biological Foundation Models. - Juan Jose Garau-Luis; Patrick Bordes; Liam Gonzalez; Masa Roller; Bernardo P. de Almeida; Christopher Blum; Lorenz Hexemer; Stefan Laurent; Maren Lang; Thomas Pierrot; Guillaume Richard (NeurIPS, 2024)

Multi-modal Transfer Learning between Biological Foundation Models. - Juan Jose Garau-Luis; Patrick Bordes; Liam Gonzalez; Masa Roller; Bernardo P. de Almeida; Lorenz Hexemer; Christopher Blum; Stefan Laurent; Jan Grzegorzewski; Maren Lang; Thomas Pierrot; Guillaume Richard (CoRR, 2024)

Simple Guidance Mechanisms for Discrete Diffusion Models. - Yair Schiff; Subham Sekhar Sahoo; Hao Phung; Guanghan Wang; Sam Boshar; Hugo Dalla-torre; Bernardo P. de Almeida; Alexander Rush; Thomas Pierrot; Volodymyr Kuleshov (CoRR, 2024)

Simple Guidance Mechanisms for Discrete Diffusion Models. - Yair Schiff; Subham Sekhar Sahoo; Hao Phung; Guanghan Wang; Sam Boshar; Hugo Dalla-torre; Bernardo P. de Almeida; Alexander M. Rush; Thomas Pierrot; Volodymyr Kuleshov (ICLR, 2025)