Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics. - Mi-Youn K. Brusniak; Bernd Bodenmiller; David S. Campbell; Kelly Cooke; James Eddes; Andrew Garbutt; Hollis Lau; Simon Letarte; Lukas N. Mueller; Vagisha Sharma; Olga Vitek; Ning Zhang; et al. (BMC Bioinform., 2008)

Can CAD cure cancer? - Smita Krishnaswamy; Bernd Bodenmiller; Dana Pe'er (DAC, 2013)

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. - Michael P. Snyder; Shin Lin; Amanda Posgai; Mark Atkinson; Aviv Regev; Jennifer Rood; Orit Rozenblatt-Rosen; Leslie Gaffney; Anna Hupalowska; Rahul Satija; Nils Gehlenborg; Jay Shendure; et al. (Nat., 2019)

An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data. - Helena L. Crowell; Stéphane Chevrier; Andrea Jacobs; Sujana Sivapatham; Tumor Profiler Consortium; Bernd Bodenmiller; Mark D. Robinson (F1000Research, 2020)

cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data. - Nils Eling; Nicolas Damond; Tobias Hoch; Bernd Bodenmiller (Bioinform., 2021)

cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data. - Lasse Meyer; Nils Eling; Bernd Bodenmiller (BMC Bioinform., 2024)