Path Based Pairwise Data Clustering with Application to Texture Segmentation. - Bernd Fischer 003; Thomas Zöller; Joachim M. Buhmann (EMMCVPR, 2001)

Data Resampling for Path Based Clustering. - Bernd Fischer 003; Joachim M. Buhmann (DAGM-Symposium, 2002)

Clustering with the Connectivity Kernel. - Bernd Fischer 003; Volker Roth 001; Joachim M. Buhmann (NIPS, 2003)

Path-Based Clustering for Grouping of Smooth Curves and Texture Segmentation. - Bernd Fischer 003; Joachim M. Buhmann (IEEE Trans. Pattern Anal. Mach. Intell., 2003)

Bagging for Path-Based Clustering. - Bernd Fischer 003; Joachim M. Buhmann (IEEE Trans. Pattern Anal. Mach. Intell., 2003)

A Hidden Markov Model for de Novo Peptide Sequencing. - Bernd Fischer 003; Volker Roth 001; Joachim M. Buhmann; Jonas Grossmann; Sacha Baginsky; Wilhelm Gruissem; Franz F. Roos; Peter Widmayer (NIPS, 2004)

Probabilistic De Novo Peptide Sequencing with Doubly Charged Ions. - Hansruedi Peter; Bernd Fischer 003; Joachim M. Buhmann (DAGM-Symposium, 2006)

Dense Stereo by Triangular Meshing and Cross Validation. - Peter Wey; Bernd Fischer 003; Herbert Bay; Joachim M. Buhmann (DAGM-Symposium, 2006)

Semi-supervised LC/MS alignment for differential proteomics. - Bernd Fischer 003; Jonas Grossmann; Volker Roth 001; Wilhelm Gruissem; Sacha Baginsky; Joachim M. Buhmann (ISMB (Supplement of Bioinformatics), 2006)

The kernelHMM : Learning Kernel Combinations in Structured Output Domains. - Volker Roth 001; Bernd Fischer 003 (DAGM-Symposium, 2007)

PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra. - Franz F. Roos; Riko Jacob; Jonas Grossmann; Bernd Fischer 003; Joachim M. Buhmann; Wilhelm Gruissem; Sacha Baginsky; Peter Widmayer (Bioinform., 2007)

Time-series alignment by non-negative multiple generalized canonical correlation analysis. - Bernd Fischer 003; Volker Roth 001; Joachim M. Buhmann (BMC Bioinform., 2007)

Improved functional prediction of proteins by learning kernel combinations in multilabel settings. - Volker Roth 001; Bernd Fischer 003 (BMC Bioinform., 2007)

Probabilistic image registration and anomaly detection by nonlinear warping. - Verena Kaynig; Bernd Fischer 003; Joachim M. Buhmann (CVPR, 2008)

The Group-Lasso for generalized linear models: uniqueness of solutions and efficient algorithms. - Volker Roth 001; Bernd Fischer 003 (ICML, 2008)

Optimal Transitions for Targeted Protein Quantification: Best Conditioned Submatrix Selection. - Rastislav Srámek; Bernd Fischer 003; Elias Vicari; Peter Widmayer (COCOON, 2009)

Adaptive bandwidth selection for biomarker discovery in mass spectrometry. - Bernd Fischer 003; Volker Roth 001; Joachim M. Buhmann (Artif. Intell. Medicine, 2009)

Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi. - Elin Axelsson; Thomas Sandmann; Thomas Horn; Michael Boutros; Wolfgang Huber; Bernd Fischer 003 (BMC Bioinform., 2011)

CellH5: a format for data exchange in high-content screening. - Christoph Sommer 002; Michael Held; Bernd Fischer 003; Wolfgang Huber; Daniel Gerlich (Bioinform., 2013)

h5vc: scalable nucleotide tallies with HDF5. - Paul Theodor Pyl; Julian Gehring; Bernd Fischer 003; Wolfgang Huber (Bioinform., 2014)

SomaticSignatures: inferring mutational signatures from single-nucleotide variants. - Julian Gehring; Bernd Fischer 003; Michael F. Lawrence; Wolfgang Huber (Bioinform., 2015)