Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins. - Matthias Rarey; Bernd Kramer; Thomas Lengauer (ISMB, 1995)

Multiple automatic base selection: Protein-ligand docking based on incremental construction without manual intervention. - Matthias Rarey; Bernd Kramer; Thomas Lengauer (J. Comput. Aided Mol. Des., 1997)

Docking of hydrophobic ligands with interaction-based matching algorithms. - Matthias Rarey; Bernd Kramer; Thomas Lengauer (Bioinform., 1999)