ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. - Pål Puntervoll; Rune Linding; Christine Gemünd; Sophie Chabanis-Davidson; Morten Mattingsdal; Scott Cameron; David M. A. Martin; Gabriele Ausiello; Barbara Brannetti; Anna Costantini; Fabrizio Ferrè; Vincenza Maselli; et al. (Nucleic Acids Res., 2003)

Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins. - Francesca Diella; Scott Cameron; Christine Gemünd; Rune Linding; Allegra Via; Bernhard Küster; Thomas Sicheritz-Pontén; Nikolaj Blom; Toby J. Gibson (BMC Bioinform., 2004)

Software Tools for MS-Based Quantitative Proteomics: A Brief Overview. - Simone Lemeer; Hannes Hahne; Fiona Pachl; Bernhard Küster (Quantitative Methods in Proteomics, 2012)

A multivariate approach to the integration of multi-omics datasets. - Chen Meng; Bernhard Küster; Aedín C. Culhane; Amin Moghaddas Gholami (BMC Bioinform., 2014)

Dimension reduction techniques for the integrative analysis of multi-omics data. - Chen Meng; Oana A. Zeleznik; Gerhard G. Thallinger; Bernhard Küster; Amin Moghaddas Gholami; Aedín C. Culhane (Briefings Bioinform., 2016)

Computational Proteomics (Dagstuhl Seminar 17421). - Bernhard Küster; Kathryn S. Lilley; Lennart Martens (Dagstuhl Reports, 2017)

Wilhelm et al. reply. - Mathias Wilhelm 001; Hannes Hahne; Mikhail M. Savitski; Harald Marx; Simone Lemeer; Marcus Bantscheff; Bernhard Küster (Nat., 2017)

ProteomicsDB. - Tobias Schmidt 003; Patroklos Samaras; Martin Frejno; Siegfried Gessulat; Maximilian Barnert; Harald Kienegger; Helmut Krcmar; Judith Schlegl; Hans-Christian Ehrlich; Stephan Aiche; Bernhard Küster; Mathias Wilhelm 001 (Nucleic Acids Res., 2018)

ProteomicsDB: a multi-omics and multi-organism resource for life science research. - Patroklos Samaras; Tobias Schmidt 003; Martin Frejno; Siegfried Gessulat; Maria Reinecke; Anna Jarzab; Jana Zecha; Julia Mergner; Piero Giansanti; Hans-Christian Ehrlich; Stephan Aiche; Johannes Rank; et al. (Nucleic Acids Res., 2020)

ProteomicsDB: toward a FAIR open-source resource for life-science research. - Ludwig Lautenbacher; Patroklos Samaras; Julian Müller 007; Andreas Grafberger; Marwin Shraideh; Johannes Rank; Simon T. Fuchs; Tobias K. Schmidt; Matthew The; Christian Dallago; Holger Wittges; Burkhard Rost; et al. (Nucleic Acids Res., 2022)

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt. - Yuliya Burankova; Miriam Abele; Mohammad Bakhtiari; Christine von Törne; Teresa Barth; Lisa Schweizer; Pieter Giesbertz; Johannes R. Schmidt; Stefan Kalkhof; Janina Müller-Deile; Peter A. van Veelen; Yassene Mohammed; et al. (CoRR, 2024)