Heuristic Algorithms for the Protein Model Assignment Problem. - Jörg Hauser; Kassian Kobert; Fernando Izquierdo-Carrasco; Karen Meusemann; Bernhard Misof; Michael Gertz 001; Alexandros Stamatakis (ISBRA, 2013)

Selecting informative subsets of sparse supermatrices increases the chance to find correct trees. - Bernhard Misof; Benjamin Meyer; Björn Marcus von Reumont; Patrick Kück; Katharina Misof; Karen Meusemann (BMC Bioinform., 2013)

A priori assessment of data quality in molecular phylogenetics. - Bernhard Misof; Karen Meusemann; Björn Marcus von Reumont; Patrick Kück; Sonja J. Prohaska; Peter F. Stadler (Algorithms Mol. Biol., 2014)

AliGROOVE - visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support. - Patrick Kück; Sandra A. Meid; Christian Groß 006; Johann-Wolfgang Wägele; Bernhard Misof (BMC Bioinform., 2014)

Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes. - Malte Petersen; Karen Meusemann; Alexander Donath; Daniel Dowling; Shanlin Liu; Ralph S. Peters; Lars Podsiadlowski; Alexandros Vasilikopoulos; Xin Zhou; Bernhard Misof; Oliver Niehuis (BMC Bioinform., 2017)