Discovering causal signaling pathways through gene-expression patterns. - Jignesh R. Parikh; Bertram Klinger; Yu Xia 002; Jarrod A. Marto; Nils Blüthgen (Nucleic Acids Res., 2010)

Computer-assisted curation of a human regulatory core network from the biological literature. - Philippe Thomas 002; Pawel Durek; Illés Solt; Bertram Klinger; Franziska Witzel; Pascal Schulthess; Yvonne Mayer; Domonkos Tikk; Nils Blüthgen; Ulf Leser (Bioinform., 2015)

Comparative Network Reconstruction using mixed integer programming. - Evert Bosdriesz; Anirudh Prahallad; Bertram Klinger; Anja Sieber; Astrid Bosma; René Bernards; Nils Blüthgen; Lodewyk F. A. Wessels (Bioinform., 2018)

Modelling signalling networks from perturbation data. - Mathurin Dorel; Bertram Klinger; Torsten Gross; Anja Sieber; Anirudh Prahallad; Evert Bosdriesz; Lodewyk F. A. Wessels; Nils Blüthgen (Bioinform., 2018)

SPEED2: inferring upstream pathway activity from differential gene expression. - Mattias Rydenfelt; Bertram Klinger; Martina Klünemann; Nils Blüthgen (Nucleic Acids Res., 2020)

Neuroblastoma signalling models unveil combination therapies targeting feedback-mediated resistance. - Mathurin Dorel; Bertram Klinger; Tommaso Mari; Joern Toedling; Eric Blanc; Clemens Messerschmidt; Michal Nadler-Holly; Matthias Ziehm; Anja Sieber; Falk Hertwig; Dieter Beule; Angelika Eggert; et al. (PLoS Comput. Biol., 2021)

Quantitative modeling of signaling in aggressive B cell lymphoma unveils conserved core network. - Bertram Klinger; Isabel Rausch; Anja Sieber; Helmut Kutz; Vanessa Kruse; Marieluise Kirchner; Philipp Mertins; Arnd Kieser; Nils Blüthgen; Dieter Kube (PLoS Comput. Biol., 2024)