Detecting hypermutations in viral sequences with an emphasis on G A hypermutation. - Patrick P. Rose; Bette T. Korber (Bioinform., 2000)

Retrieval and on-the-fly alignment of sequence fragments from the HIV database. - Brian Gaschen; Carla Kuiken; Bette T. Korber; Brian T. Foley (Bioinform., 2001)

HLA and HIV Infection Progression: Application of the Minimum Description Length Principle to Statistical Genetics. - Peter T. Hraber; Bette T. Korber; Steven Wolinsky; Henry A. Erlich; Elizabeth A. Trachtenberg; Thomas B. Kepler (ISBMDA, 2006)

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. - Anne-Kathrin Schultz; Ming Zhang; Thomas Leitner; Carla Kuiken; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (BMC Bioinform., 2006)

jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. - Ming Zhang; Anne-Kathrin Schultz; Charles Calef; Carla Kuiken; Thomas Leitner; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (Nucleic Acids Res., 2006)

Immunoinformatics Comes of Age. - Bette T. Korber; Montiago LaBute; Karina Yusim (PLoS Comput. Biol., 2006)

Web-based design and evaluation of T-cell vaccine candidates. - James Thurmond; Hyejin Yoon; Carla Kuiken; Karina Yusim; Simon Perkins; James Theiler; Tanmoy Bhattacharya 001; Bette T. Korber; Will Fischer 001 (Bioinform., 2008)

Coping with Viral Diversity in HIV Vaccine Design: A Response to Nickle et al. - Will Fischer 001; H. X. Liao; Barton F. Haynes; Norman L. Letvin; Bette T. Korber (PLoS Comput. Biol., 2008)

jpHMM: Improving the reliability of recombination prediction in HIV-1. - Anne-Kathrin Schultz; Ming Zhang; Ingo Bulla; Thomas Leitner; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (Nucleic Acids Res., 2009)

HIV classification using the coalescent theory. - Ingo Bulla; Anne-Kathrin Schultz; Fabian Schreiber; Ming Zhang; Thomas Leitner; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (Bioinform., 2010)

Estimating time since infection in early homogeneous HIV-1 samples using a poisson model. - Elena E. Giorgi; Bob Funkhouser; Gayathri Athreya; Alan S. Perelson; Bette T. Korber; Tanmoy Bhattacharya 001 (BMC Bioinform., 2010)

Genetic Signatures in the Envelope Glycoproteins of HIV-1 that Associate with Broadly Neutralizing Antibodies. - S. Gnanakaran; Marcus G. Daniels; Tanmoy Bhattacharya 001; Alan S. Lapedes; Anurag Sethi; Ming Li; Haili Tang; Kelli Greene; Hongmei Gao; Barton F. Haynes; Myron S. Cohen; George M. Shaw; et al. (PLoS Comput. Biol., 2010)

A multiple-alignment based primer design algorithm for genetically highly variable DNA targets. - Johanna Brodin; Mohan Krishnamoorthy; Gayathri Athreya; Will Fischer 001; Peter T. Hraber; Cheryl Gleasner; Lance Green; Bette T. Korber; Thomas Leitner (BMC Bioinform., 2013)

A Mechanistic Understanding of Allosteric Immune Escape Pathways in the HIV-1 Envelope Glycoprotein. - Anurag Sethi; Jianhui Tian; Cynthia A. Derdeyn; Bette T. Korber; S. Gnanakaran (PLoS Comput. Biol., 2013)

CATNAP: a tool to compile, analyze and tally neutralizing antibody panels. - Hyejin Yoon; Jennifer Macke; Anthony P. West Jr.; Brian T. Foley; Pamela J. Bjorkman; Bette T. Korber; Karina Yusim (Nucleic Acids Res., 2015)

Integrated sequence and immunology filovirus database at Los Alamos. - Karina Yusim; Hyejin Yoon; Brian T. Foley; Shihai Feng; Jennifer Macke; Mira Dimitrijevic; Werner Abfalterer; James Szinger; Will Fischer 001; Carla Kuiken; Bette T. Korber (Database J. Biol. Databases Curation, 2016)

Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein. - Jianhui Tian; Cesar A. López; Cynthia A. Derdeyn; Morris S. Jones; Abraham Pinter; Bette T. Korber; S. Gnanakaran (PLoS Comput. Biol., 2016)